Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка

The QSAR models previously created by the OCHEM web platform were used for the research and design of novel isoxazole derivatives as antimicrobial agents. Based on the created virtual set of promising isoxazole derivatives, a number of potential antibacterial agents were selected for synthesis and f...

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Datum:2022
Hauptverfasser: Hodyna, Diana M., Pavliuk, Oleksandr V., Baran, Maria M., Yevdokymenko, Vitaliy O., Kovalishyn, Vasyl V., Metelytsia, Larysa O.
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Sprache:Englisch
Veröffentlicht: V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the National Academy of Sciences of Ukraine 2022
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Ukrainica Bioorganica Acta
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author Hodyna, Diana M.
Pavliuk, Oleksandr V.
Baran, Maria M.
Yevdokymenko, Vitaliy O.
Kovalishyn, Vasyl V.
Metelytsia, Larysa O.
author_facet Hodyna, Diana M.
Pavliuk, Oleksandr V.
Baran, Maria M.
Yevdokymenko, Vitaliy O.
Kovalishyn, Vasyl V.
Metelytsia, Larysa O.
author_institution_txt_mv [ { "author": "Diana M. Hodyna", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" }, { "author": "Oleksandr V. Pavliuk", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" }, { "author": "Maria M. Baran", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" }, { "author": "Vitaliy O. Yevdokymenko", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" }, { "author": "Vasyl V. Kovalishyn", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" }, { "author": "Larysa O. Metelytsia", "institution": "V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine" } ]
author_sort Hodyna, Diana M.
baseUrl_str https://bioorganica.com.ua/index.php/journal/oai
collection OJS
datestamp_date 2026-07-19T14:56:53Z
description The QSAR models previously created by the OCHEM web platform were used for the research and design of novel isoxazole derivatives as antimicrobial agents. Based on the created virtual set of promising isoxazole derivatives, a number of potential antibacterial agents were selected for synthesis and further research. A convenient synthetic sequence for obtaining initial isoxazole-containing sulfonylamides and preparative methods for the synthesis of target sulfonylamides of the isoxazole series, in particular, using ring-closing metathesis reactions, were worked out. The results of in vitro antimicrobial activity evaluation of synthesized compounds with predicted high activity showed that a series of isoxazole-containing sulfonylamides are promising antimicrobial agents with a wide spectrum of antibacterial action, especially against multidrug-resistant E. coli, A. baumannii and S. aureus bacterial pathogens. In vivo assessment of the acute toxicity of the studied compounds on the D. magna as a known biosensor proved that most of the studied isoxazole derivatives can be attributed to the class of slightly toxic substances according to the classification developed by Passino and Smith for hydrobionts
doi_str_mv 10.15407/bioorganica2022.02.023
first_indexed 2025-07-17T12:19:36Z
format Article
fulltext ISSN 1814-9758. Ukr. Bioorg. Acta, 2022, Vol. 17, N 2 UDC 547.7/.8, 579.22, 615.281: 577.1 DOI: https://doi.org/10.15407/bioorganica2022.02.023 23 RESEARCH ARTICLE Isoxazole-containing sulfonylamides as new antibacterial agents: in silico study, synthesis and in vitro evaluation Diana M. Hodyna*, Oleksandr V. Pavliuk, Maria M. Baran, Vitaliy O. Yevdokymenko, Vasyl V. Kovalishyn, Larysa O. Metelytsia V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv, Ukraine Abstract: The QSAR models previously created by the OCHEM web platform were used for the research and design of novel isoxazole derivatives as antimicrobial agents. Based on the created virtual set of promising isoxazole derivatives, a number of potential antibacterial agents were selected for synthesis and further research. A convenient synthetic sequence for obtaining initial isoxazole-containing sulfonylamides and preparative methods for the synthesis of target sulfonylamides of the isoxazole series, in particular, using ring-closing metathesis reactions, were worked out. The results of in vitro antimicrobial activity evaluation of synthesized compounds with predicted high activity showed that a series of isoxazole-containing sulfonylamides are promising antimicrobial agents with a wide spectrum of antibacterial action, especially against multidrug-resistant E. coli, A. baumannii and S. aureus bacterial pathogens. In vivo assessment of the acute toxicity of the studied compounds on the D. magna as a known biosensor proved that most of the studied isoxazole derivatives can be attributed to the class of slightly toxic substances according to the classification developed by Passino and Smith for hydrobionts. Keywords: QSAR; antibacterial activity; isoxazole; sulfonylamide; toxicity. Introduction The wide range of pharmacological activity of sulfo- containing derivatives in organic chemistry makes them a convenient option for inclusion in a significant number of available drugs on the marketplace [1-2]. Sulfonylamides are a well-known class of broad-spectrum synthetic antibiotics. Thus, in particular, they are quite effective against gram-positive and some gram-negative bacteria such as Salmonella, Escherichia coli, and Enterobacter, but are ineffective against Pseudomonas aeruginosa and Serratia species [3-4]. It is known about the effectiveness of the use of sulfonylamides in the treatment of tonsillitis, hypoglycemia, thyroiditis, inflammation, glaucoma, bacillary dysentery, septicemia, and urinary tract diseases [5-6]. Received: Revised: Accepted: Published online: 18.08.2021 13.09.2021 25.10.2021 30.12.2021  Corresponding author. Tel.: +380-44-296-0409; e-mail: dianahodyna@gmail.com (D.M. Hodyna) ORCID: 0000-0001-6161-9833 There is evidence of the effectiveness of sulfonylamides against some fungal and bacterial infections caused by Nocardia species, Staphylococcus aureus, and Escherichia coli [7-9]. Isoxazole-containing derivatives are one of the interesting, promising but little-studied representatives of nitrogen-containing heterocycles with an Oxygen atom, which, due to a number of practically useful properties, are considered one of the most important classes of substances for use in medical chemistry and are an important source of valuable drugs with a diverse spectrum of action [10-12]. Sulfo-derivatives are one of the most intensively studied derivatives among the numerous isoxazole derivatives, a significant number of which are a variety of biologically active substances and even commercially available drugs. They are quite actively used in the development of synthetic bacteriostatic antibiotics of various spectrums of action [13- 16]. In this study, we evaluated the use of isoxazole- containing sulfonylamides as a broad spectrum of action using in vitro studies and QSAR modeling as method for studying the quantitative relationship between the structure of substances and biological activity based on the © Hodyna D.M. et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Ukrainica Bioorganica Acta www.bi oorgan ica .org .ua https://orcid.org/0000-0001-6161-9833 ISSN 1814-9758. Ukr. Bioorg. Acta, 2022, Vol. 17, N 2 24 description of the structure of a chemical compound using a set of numerical descriptors and machine learning methods [17-19]. Results and Discussion In this study the antibacterial activity of isoxazole- containing sulfonylamides as E. coli inhibitors was predicted using previously developed and published on the OCHEM server regression QSAR models [20]. The dataset included 5143 compounds active against E. coli ATCC 25922 which was randomly divided into training (3780 compounds) and test (1363 compounds) sets. Three regression QSAR models built by the Trans-CNN, ASNN, and RFR methods and the consensus model as an average of all three models were created using descriptor packages such as E-state, ALOGPS and CDK2, with the best performances. The results are summarized in Table 1 and the consensus model performance is shown in Figure 1. Table 1. Statistical coefficients calculated for QSAR models obtained from data with activity against E. coli N MLM Training Set Test Set R2 q2 RMSE R2 q2 RMSE 1 Trans-CNN 0.80 ± 0.01 0.80 ± 0.01 0.48 ± 0.01 0.8 ± 0.02 0.8 ± 0.02 0.48 ± 0.02 2 ASNN 0.73 ± 0.01 0.72 ± 0.01 0.58 ± 0.01 0.74 ± 0.02 0.74 ± 0.02 0.57 ± 0.03 3 RFR 0.76 ± 0.01 0.75 ± 0.01 0.55 ± 0.01 0.78 ± 0.02 0.77 ± 0.02 0.53 ± 0.02 4 Consensus model 0.79 ± 0.01 0.79 ± 0.01 0.34 ± 0.01 0.80 ± 0.02 0.79 ± 0.01 0.33 ± 0.01 MLM – machine learning method; R2 – square of correlation coefficient; q2 – coefficient of determination; RMSE – Root Mean Squared Error. CH3 OCH3 Ar = , , N O Ar Br N O Ar S N O Ar S Na2SO3 PCl5 O O ONa O O Cl . 1a-c 2a-c 3a-c a b c N O Ar S O O N O HN O 4a-c Scheme 1. Synthesis of isoxazole-containing sulfonyl chlorides and corresponding sulfonylamides. N O Ar S O O N O 4a-c Br KOH N O Ar S O O N O 5a-c - C2H2 Ru = N O Ar S O O N O 6a-b Ru CH3 OCH3 Ar = , , a b c Ru PCy3 PCy3 Cl Cl Scheme 2. Synthesis of isoxazole-containing target sulfonylamides. D.M. Hodyna, O.V. Pavliuk et al. 25 Figure 1. Plots of experimental versus predicted values for the consensus QSAR model for E. coli inhibitors; minimum inhibitory concentration (MIC) is the lowest concentration of a chemical which prevents the visible growth of a bacteria. Please refer to Table 1 for the goodness of fit parameters. Figure 1 shows the regression line plotting the values predicted by the consensus QSAR model for E. coli inhibitors. Most predictions do not differ from the experimental values by more than 1 log unit. Only 5.6% of molecules in the training set have residuals between the experimental and predicted - log(MIC) higher than one log unit. In the test set, 5% of molecules have residuals between the experimental and predicted - log(MIC) that are higher than one log unit, but lower than two log units. This result supports the robustness of the developed consensus model (Figure 1, Table 1). The antibacterial activity of virtual compounds was predicted by the developed consensus QSAR model. In order to select compounds for synthesis and biological testing, attention was paid to the anti-E. coli inhibitors with predicted activity (- log(MIC) as 100 µM including the structural features of isoxazole-containing sulfonylamides (Table 2). As we previously reported, one of the convenient ways of obtaining isoxazole-containing sulfonyl chlorides is the interaction of sulfinic acid salts with phosphorus pentachloride. Sulfonyl chlorides of the isoxazole series are obtained by boiling water-alcohol solutions of the corresponding halides with equimolar amounts of sodium sulfite, followed by the interaction of thoroughly dried salts of sulfinic acids with phosphorus pentachloride (Scheme 1) [21]. As a result of the interaction of isoxazole-containing sulfonyl chlorides with the corresponding amines in the presence of triethylamine in the solutions of dichloromethane at a temperature of about 5-10 ºC for 0.5-1 hours a series of isoxazole-containing sulfonylamides were obtained (Scheme 1). Target products 3a-c were obtained with 82-85% yields. The structure of obtained compounds is confirmed by the data of chromatomas spectra, 1H, 13C NMR spectra and elemental analysis. Sulfonylamides 4a-c were alkylated on active methylene group with 3 equivalents of allyl bromide (50% excess) in DMF solutions at a temperature of 65-70 ºС for 4-5 hours in the presence of 3 equivalents of potassium hydroxide (50% excess) (Scheme 2). Diallyl containing sulfonylamides 5a-c were isolated with 63-67% yields. Their structure is confirmed by chromatomass spectra, elemental analysis and data of 1H, 13C NMR spectra. Ring-closing metathesis reactions of the diallyl derivatives 5a-b were carried out in solutions of dry degassed dichloromethane in the atmosphere of dry argon at a temperature of 25-30 ºC for 10-12 hours using a ruthenium-carbene catalyst ([Ru]) (Scheme 2). Cycloalkenil products 6a-b were isolated after chromatographic purification with 71-75% yields. Their structure is confirmed by chromatomass spectra, elemental analysis and data of 1H, 13C NMR spectra, elemental analysis. The obtained results of antibacterial activity of synthesized isoxazole-containing sulfonylamides with predicted anti-E. coli activity against standard and MDR bacterial strains are presented in Table 2. The results presented in Table 2 demonstrated in vitro high antibacterial potential of almost all studied isoxazole- containing sulfonylamides (except compound 5b) against Gram-negative E. coli ATCC strain, which confirmed the results of QSAR prediction of anti-E. coli activity. Zones diameters of growth inhibition of the indicated ATCC culture strain were 15-25 mm for seven tested compounds. It is also worth noting that all compounds except compound 5b showed activity in the range of 11 to 24 mm against the E. coli HMR strain. The least sensitive strain of E. coli MDR showed sensitivity only to compound 4b with an activity of 14 mm by the diameter of the growth inhibition zone. Thus, it was experimentally proven that the isoxazole- containing sulfanilamide 4b is the most active against all studied E. coli strains (zone diameters of growth inhibition were in the range from 14 mm to 25 mm). Considering the established high antibacterial potential of the studied isoxazole-containing sulfonylamides against E. coli strains, the futures studies were focusing on the compounds activity against a wider range of standard and antibiotic-resistant bacterial strains. It was found that studied isoxazole-containing sulfonylamides 4a-b and 6a-b possessed a high antibacterial effect against all studied A. baumannii strains (zones diameters of growth inhibition were in the range from 8 mm to 22 mm). Also, сompounds 4a-b, 5b, and 6a-b were effective against the gram-positive S. aureus ATCC 25923 strain with a range of zones diameter of growth inhibition of 14-17 mm and against MDR S. aureus strain with a range of zones diameter of growth inhibition of 12-15 mm. The prospects of the studied isoxazole-containing sulfonylamides as antibacterials were confirmed by the in vivo results of their toxic profile. 0 1 2 3 4 5 6 7 8 9 0 2 4 6 8 P re d ic te d - lo g (M IC ) Observed -log(MIC) Training set Test set ISSN 1814-9758. Ukr. Bioorg. Acta, 2022, Vol. 17, N 2 26 Table 2. In vitro antibacterial activity of isoxazole-containing sulfonylamides with predicted activity. Compd Zone diameter of growth inhibition of bacterial strains, mm E. coli А. baumannii S. aureus Predicted activity -log(MIC) ATCC 25922 HMRа MDRb MDR 1355 MDR 1536 MDR 871 MDR 725 ATCC 25923 MDRс 4a 3.7 ± 0.8 16 15 na* 11 14 13 8 14 12 4b 3.7 ± 0.8 25 24 14 22 15 12 11 17 13 4c 3.7 ± 0.8 15 11 na 11 9 8 na na na 5a 3.9 ± 0.8 15 14 na 11 na na na na na 5b 4.0 ± 1.2 na na na na na na na 15 15 5c 4.0 ± 1.2 18 12 na 10 8 12 na na na 6a 3.8 ± 0.8 16 13 na 16 12 11 10 15 12 6b 3.8 ± 0.8 17 11 na 15 12 10 9 15 13 na* - no activity. aClinical isolate of hemolytic E. coli resistant to carbenicillin, ceftazidime, cefoxitin, oxacillin. bClinical isolate of E. coli resistant to ampicillin, doxycycline, carbenicillin, cefoxitin, ceftazidime, ceftriaxone, kanamycin, oxacillin, ofloxacin, tetracycline. сClinical isolate of S. aureus resistant to ampicillin, carbenicillin, ceftazidime, oxacillin, tetracycline. Table 3. Acute toxicity of isoxazole-containing sulfonylamides as potential antibacterial agents using biomarker D. magna. Compd LC50 (mg/L) 95% confidence intervals Toxicity level classification (by D.R. Passino and S.B. Smith)* 4a > 100 - + 4b 45.33 ± 13.40 17.18-73.48 + + 4c 37.32 ± 10.59 15.69-58.95 + + 5a 25.69 ± 6.08 12.91-38.47 + + 5b 21.84 ± 5.12 10.36-32.13 + + 5c 33.23 ± 10.04 13.67-52.45 + + 6a 44.45 ± 14.36 18.25-74.49 + + 6b 41.08 ± 13.97 11.73-70.42 + + «-» not determined. *Toxicity classification by LC50 range: « + » practically harmless (100-1000 mg/L); « + + » slightly toxic (10-100 mg/L); « + + + » moderately toxic (1-10 mg/L); « + + + +» highly toxic (0.1-1 mg/L). One of the most widely used international biological tests for screening the toxicity of chemical substances is the acute toxicity test using invertebrate hydrobionts such as cyclops, amphipods, artemia and daphnia [22-23]. Daphnia magna is one of the most common planktonic crustaceans from the Cladocera suborder [24-25]. Due to the high reproduction rate, sizes sufficient for visual observation, availability in nature, laboratory maintenance and high sensitivity to the toxicity of chemical compounds, D. magna was used as a test organism in determining the acute toxicity of the studied isoxazole-containing sulfonylamides as antibacterials. The results of the acute toxicity evaluation (48 h LC50 values) of the tested isoxazole-containing sulfonylamides as potential antibacterial agents are presented in Table 3. Presented in Table 3 the obtained results of in vivo testing using the hydrobiont D. magna demonstrated two levels of acute toxicity of the studied isoxazole-containing sulfonylamides. In general, most of the investigated isoxazole-containing derivatives 4b-c, 5a-c and 6a-b according to the classification of Passino and Smith can be attributed to the class of slightly toxic substances with a range of LC50 values from 21.84 mg/L to 45.33 mg/L [26]. The least toxic compound 4a can be classified as practically harmless with LC50 > 100 mg/L. Conclusions The antibacterial activity of new isoxazole derivatives was predicted by a number of developed and published earlier regression QSAR models using the OCHEM web platform. Eight new isoxazole-containing sulfonylamides were identified for biological testing, the anti-E. coli activity of which was predicted up to 100 µM. Convenient and effective strategies for obtaining the corresponding new D.M. Hodyna, O.V. Pavliuk et al. 27 sulfonylamides of the isoxazole series with an active methylene group were developed, which were subsequently transformed into the corresponding dialkenyl derivatives. Using ring-closing metathesis reactions, a number of new cyclopentenyl-containing arylsulfonylamides of the isoxazole series were synthesized. The obtained in silico and in vitro studies results of the antibacterial activity of synthesized isoxazole-containing sulfanilamides proved the high antibacterial potential of a number of tested compounds against both gram-positive and gram-negative bacterial pathogens of E. coli, A. baumannii and S. aureus, including multiresistant strains and their positive toxicity profile (LC50 values from 41.08 mg/L to > 100 mg/L, which corresponds to the class of practically harmless substances). Experimental section Chemistry General information: 1H (500 MHz) and 13C (125 MHz) NMR spectra were recorded on Bruker Avance DRX 500 spectrometer in CDCl3. Chromatomass spectra were recorded using a liquid chromatography-mass spectrometric system using an Agilent 1100 Series high- performance liquid chromatograph equipped with a diode array with an Agilent LC/MSD SL mass-selective detector (ionization method - is the chemical ionization at atmospheric pressure, APCI). Parameters of chromatography-mass analysis: column-Zorbax SB-C18, 1.8 µm, 4.6 х 15 mm; solvents A) MeCN-H2O 95 : 5, 0.1% aqueous CF3COOH, B) 0.1% aqueous CF3COOH; flow eluent – 3 ml / min; Injection volume – 1 µm; UV detectors – 215, 254, 285 nm; Cl at atmospheric pressure. Elemental analysis was carried out in the laboratory of analytical chemistry of the Institute of Bioorganic Chemistry and Petrochemistry of the National Academy of Sciences of Ukraine: the carbon and hydrogen content was determined by the weight method of Pregle, nitrogen by the Dumas gas meterind method, and chlorine by the mercuric method. For column chromatography, was used silica gel Merck Grade 9385, 60 A, 230-400. The commercially available reagents and solvents were used for this work, sulfonyl chloride of isoxazoles series (3a-c) were synthesized from corresponding bromo derivatives by the procedure [21]. General procedure for the synthesis of 4-(3-arylisoxazol- 5-yl-methyl) sulfonylamides To a solution of 0,01 mol of the corresponding sulfonyl chloride (3a-c) in dichloromethane in the presence of 0.01 mol of triethylamine, 0.01 mol of morpholine in 30 ml of dichloromethane was added dropwise over 0,5-1 hour at 5-10 °C. After addition, the reaction mixture was stirred for 1 hour at room temperature. After completion of the reaction, the mixture was filtered, the solvent was evaporated in vacuo, and the residue was washed with water (2 x 20 ml). Target products were purified by recrystalli- zation from 96% ethanol. 4-(3-Phenyl-isoxazol-5-ylmethanesulfonyl)-morpholine (4a). Yield 82%; mp 135-136 °C. 1H NMR (500 MHz, CDCl3) δ 7.87-7.79 (m, 2H), 7.53-7.45(m, 3H), 6.82(s, 1H), 4.49 (s, 2H), 3.70 (d, J 5.5 Hz, 4H), 3.25(d, J 5.5 Hz, 4H). 13C NMR (125 MHz, CDCl3) δ 162.65, 160.94, 130.04, 128.61, 127.75, 126.38, 103.70, 66.10, 47.16, 45.41. MS (Cl): m/z 309 (MH+ 100). Anal. calcld. for C14H16N2O4S: C, 54.53; H, 5.23; N, 9.08; S, 10.40. Found: C, 54.55; H, 5.20; N, 9.05; S, 10.37. 4-(3-p-Tolyl-isoxazol-5-ylmethanesulfonyl)-morpholine (4b). Yield 85%; mp 140-141 °C. 1H NMR (500 MHz, CDCl3) δ 7.73-7.75 (m, 2H), 7.32-7.27 (m, 2H), 6.79 (s, 1H), 4.48 (s, 2H), 3.71(d, J 5.5 Hz, 4H), 3.26 (d, J 5.5 Hz, 4H), 2.42 (s, 3H). 13C NMR (125 MHz, CDCl3) δ 162.55, 160.65, 140.22, 129.25, 126.22, 124.84, 103.60, 66.06, 47.15, 45.36, 20.95. MS (Cl): m/z 323 (MH+ 100). Anal. calcld. for C15H18N2O4S: C, 55.88; H, 5.63; N, 8.69; S, 9.95. Found: C, 55.85; H, 5.66; N, 8.71; S, 9.93. 4-[3-(4-Methoxy-phenyl)-isoxazol-5-ylmethanesulfonyl]- morpholine (4c). Yield 83%; mp 149-150 °C. 1H NMR (500 MHz, CDCl3) δ 7.75 (d, J 10.0 Hz, 2H), 7.00(d, J 10.0 Hz, 2H), 6.76 (s, 1H), 4.47 (s, 2H), 3.87 (s, 3H), 3.69 (d, J 5.5 Hz, 4H), 3.2869 (d, J 5.5 Hz, 4H). 13C NMR (125 MHz, CDCl3) δ 162.19, 160.86, 160.56, 127.77, 120.15, 113.96, 103.44, 66.05, 54.91, 47.10, 45.35. MS (Cl): m/z 339 (MH+ 100). Anal. calcld. for C15H18N2O5S: C, 53.24; H, 5.36; N, 8.28; S, 9.48. Found: C, 53.20; H, 5.40; N, 8.25; S, 9.5 General procedure for the synthesis of for 4-(4-(3-Aryl- isoxazol-5-yl))-hepta-1,6-diene-4- sulfonylamides To a mixture of 0.005 mol of the corresponding sulfonylamide (4a-c) and 0.015 mol potassium hydroxide in 20 ml of DMF, 0.015 mol of allyl bromide was added. The reaction mixture was stirred at a temperature of 65-70 °C for 4-5 hours. The solvent was removed in vacuo, the residue was washed with water, and the product was extracted with 2 x 15 ml of dichloromethane. The extract was dried with anhydrous sodium sulfate and after purification by chromatography (silica gel Merck Grade 9385, 60 A, 230-400, eluent dichloromethane) the product was isolated by evaporation of the solvent and subsequent recrystallization from 70% aqueous ethanol. 4-[4-(3-Phenyl-isoxazol-5-yl)-hepta-1,6-diene-4- sulfonyl]-morpholine (5a). Yield 67%; mp 87-88 °C. 1H NMR (500 MHz, CDCl3) δ 7.87-7.79 (m, 2H), 7.53-7.46 (m, 3H), 6.77 (s, 1H), 5.80- 5.93 (m, 2H), 5.18-5.31 (m, 4H), 3.64 (s, 4H), 3.16 (s, 4H), 3.08-3.14 (m, 2H), 2.98-3.07 (m, 2H). 13C NMR (125 MHz, CDCl3) δ 168.60, 162.18, 130.34, 130.01, 128.61, 127.84, 126.32, 120.06, 103.55, 68.56, 66.62, 46.58, 35.75. MS (Cl): m/z 389 (MH+ 100). Anal. calcld. for C20H24N2O4S: C, 61.83; H, 6.23; N, 7.21; S, 8.25. Found: C, 61.80; H, 6.25; N, 7.18; S, 8.30. ISSN 1814-9758. Ukr. Bioorg. Acta, 2022, Vol. 17, N 2 28 4-[4-(3-p-Tolyl-isoxazol-5-yl)-hepta-1,6-diene-4- sulfonyl]-morpholine (5b). Yield 63%; mp 99-100 °C. 1H NMR (500 MHz, CDCl3) δ 7.72 (d, J 10.5 Hz, 2H ), 7.30 (d, J 10.5 Hz, 2H ), 6,74 (s, 1H), 5.80-5.94 (m, 2H), 5.17-5.30 (m, 4H), 3.64 (s, 4H), 3.13-3.23 (m, 4H), 3.10-3.12 (m, 2H), 2.99-3.05 (m, 2H), 2.43 (s, 3H). 13C NMR (125 MHz, CDCl3) δ 168.35, 162.11, 140.25, 130.36, 129.27, 126.19, 124.97, 120.01, 68.52, 66.60, 45.54, 35.72, 29.22, 20.96. MS (Cl): m/z 403 (MH+ 100). Anal. calcld. for C21H26N2O4S: C, 62.66; H, 6.51; N, 6.96; S, 7.97. Found: C, 62.62; H, 6.55; N, 6.93; S, 8.00. 4-{4-[3-(4-Methoxy-phenyl)-isoxazol-5-yl]-hepta-1,6- diene-4-sulfonyl}-morpholine (5c). Yield 65%; light yellow oil. 1H NMR (500 MHz, CDCl3) δ 7.75 (d, J 5.0 Hz, 2H ), 6.97 (d, J 5.0 Hz, 2H ), 6.69 (s, 1H), 5.90-5.79 (m, 2H), 5.27-5.16 (m, 4H), 3.86 (s, 3H), 3.62 (s, 4H), 3.22-3.11 (m, 4H), 3.12-3.06 (m, 2H), 3.04- 2.96 (m, 2H). 13C NMR (125 MHz, CDCl3) δ 168.68, 162.19, 161.31, 130.80, 128.19, 120.71, 120.47, 114.43, 103.75, 68.94, 67.06, 55.39, 46.97, 36.17. MS (Cl): m/z 419 (MH+ 100). Anal. calcld. for C21H26N2O5S: C, 60.27; H, 6.26; N, 6.69; S, 7.66. Found: C, 60.30; H, 6.23; N, 6.70; S, 7.65. General procedure for the synthesis of for 4-[1-(3-Aryl- isoxazol-5-yl)-cyclopent-3-enyl]sulfonylamides The [Ru] catalyst (0.028-0.03 mmol, 5% mol) was added to a solution 0.6 mmol of the сorresponding diallyl derivatives 5a-b in 15 ml of dry degassed dichloromethane under a dry argon atmosphere. The mixture was kept at room temperature for 10-12 hours. After completion of the reaction, the target products were isolated from the reaction mixture by column chromatography (Merck Grade 9385, 60 A, 230-400, dichloromethane) followed by evaporation and recrystallization of the products from 70% aqueous ethanol. 4-[1-(3-Phenyl-isoxazol-5-yl)-cyclopent-3-enesulfonyl]- morpholine (6a). Yield 75%; mp 109-110 °C. 1H NMR (500 MHz, CDCl3) δ 7.79-7.87 (m, 2H), 7.44-7.53 (m, 3H), 6.84 (s, 1H), 5.75 (s, 2H), 3.65 (t, J 6.0 Hz, 4H ), 3.46 (d, J 20.0 Hz, 2H ), 3.28 (d, J 20.0 Hz, 2H ), 3.19 (t, J 6.0 Hz, 4H ). 13C NMR (125 MHz, CDCl3) δ 169.97, 162.42, 129.64, 128.57, 127.91, 127.13, 126.31, 103.03, 70.56, 66.48, 46.35, 40.77. MS (Cl): m/z 361 (MH+ 100). Anal. calcld. for C18H20N2O4S: C, 59.98; H, 5.59; N, 7.77; S, 8.90. Found: C, 59.95; H, 5.55; N, 7.75; S, 8.90. 4-[1-(3-p-Tolyl-isoxazol-5-yl)-cyclopent-3-enesulfonyl]- morpholine (6b). Yield 71%; mp 103-104 °C. 1H NMR (500 MHz, CDCl3) δ 7.70 (d, J 8.0 Hz, 2H), 7.27 (d, J 8.0 Hz, 2H), 6.79 (s, 1H), 5.73 (s, 2H), 3.68-3.59 (m, 4H), 3.43 (d, J 15.5 Hz, 2H), 3.27 (d, J 15.5 Hz, 2H), 3.21-3.12 (m, 4H), 2.40 (s, 3H).13C NMR (125 MHz, CDCl3) δ 170.15, 162.79, 140.64, 129.70, 127.58, 126.64, 125.47, 103.42, 70.96, 66.93, 46.77, 41.21, 21.43. MS (Cl): m/z 375 (MH+ 100). Anal. calcld. for C19H22N2O4S: C, 60.94; H, 5.92; N, 7.48; S, 8.56. Found: C, 60.90; H, 5.95; N, 7.50; S, 8.54. Antibacterial study The antibacterial activity of the synthesized isoxazole- containing sulfonylamides was determined by the disk- diffusion method [27] using the Mueller-Hinton agar against a number of standard (American Type Culture Collection, ATCC) and multidrug-resistant strains of gram- negative bacteria, such as E. coli and A. baumannii, and gram-positive bacterial strains of S. aureus. All culture strains were obtained from the collection of the Museum of Microbial Culture Collection of the Shupyk National Healthcare University of Ukraine. The microbial inoculum concentration was 1 x 105 colony-forming units in 1 ml (CFU/ml) of the culture liquid and was monitored by the 0.5 McFarland optical standard. The studied compounds were applied to standard paper discs (6 mm in diameter) in a volume of 0.02 ml. The inoculum was applied to Petri dishes with the appropriate nutrient medium in a volume of 0.2 ml. Incubation was carried out for 24 hours at a temperature of + 37 °C. The compound content on the disc was 10 µM. All compounds were dissolved in dimethylsulfoxide (DMSO). The studied microbial cultures were not sensitive to this solvent. The antibacterial activity of the studied compounds was determined by the diameters of the growth inhibition zones of microorganisms in mm. The experiment was repeated three times. Acute toxicity study The acute toxicity of the investigated compounds was evaluated by the LC50 indicator (the lowest concentration of compounds associated with a 50% death of test organisms within 48 hours) on the freshwater D. magna model according to OECD 202 for testing chemical compounds [28]. D. magna was kept in ventilated aquariums (pH=7.3 ± 0.3) at a temperature of 20-22 °С and a concentration of dissolved oxygen > 6.0 mg/l. Cultivation illumination was 400-600 lux with a light period of 16 ± 1 h, and 8 ± 1 h of darkness. Compounds concentrations from 0.01 mg/L to 1000 mg/L were used to determine the acute toxicity with D. magna neonates aged < 24 hours obtained by cultivation. Five neonates were placed in a 50 mL glass beaker containing 30 mL of the test solution according to the corresponding concentration of the studied compound. Two hours before the experiment, D. magna was fed with Chlorella vulgaris or baker's yeast suspension and was not fed during the experiment. Mortality of individuals in each glass was assessed within 48 hours. The experiment was repeated three times and the average value of LC50 was taken. Statistical analysis of the obtained results was performed using the Statistica 7 program. The degree of toxicity of the compound was determined according to the D.R. Passino and co-authors classification [26]. In addition, the sensitivity of D. magna to the reference model toxicant potassium dichromate (K2Cr2O7) was determined. D.M. Hodyna, O.V. Pavliuk et al. 29 Notes The authors declare no conflict of interest. Author contributions. D. M. H.: conceptualization, supervision, bioactivity investigation, results analysis, writing-original draft. O. V. P.: conceptualization, synthesis of compounds, analysis. M. M. B: synthesis of compounds, writing experimental section. V. O. Y: conceptualization, analysis. V. V. K: analysis results, conceptualization, writing and editing. L. O. M: supervision, conceptualization, results analysis, editing. References 1. Feng, M.; Tang, B.; Liang., S.H.; Jiang, X. Sulfur Containing Scaffolds in Drugs: Synthesis and Application in Medicinal Chemistry. Curr Top Med Chem. 2016, 16, 1200-16. 2. Gaba, M.; Mohan, C. Development of drugs based on imidazole and benzimidazole bioactive heterocycles: recent advances and future directions. Med Chem Res. 2016, 25, 173-210. 3. Badgujar, J.R.; More, D.H.; Meshram, J.S. Synthesis, Antimicrobial and Antioxidant Activity of Pyrazole Based Sulfonamide Derivatives. Indian J Microbiol. 2018, 58, 93-99. 4. Lavanya, R. Sulphonamides: a pharmaceutical review. International Journal of Pharmaceutical Science Invention. 2017, 6, 1-3. 5. Wiedemann, B.; Heisig, A.; Heisig, P. Uncomplicated urinary tract infections and antibiotic resistance-epidemiological and mechanistic aspects. Antibiotics. 2014, 3, 341-352. 6. Ovung, A.; Bhattacharyya, J. Sulfonamide drugs: structure, antibacterial property, toxicity, and biophysical interactions. Biophys Rev. 2021, 13, 259-272. 7. Genç, Y.; Özkanca, R.; Bekdemir, Y. Antimicrobial activity of some sulfonamide derivatives on clinical isolates of Staphylococus aureus. Ann Clin Microbiol Antimicrob. 2008, 7, 1-6. 8. Tacic, A.; Nikolic, V.; Nikolic, L.; Savic, I. Antimicrobial sulfonamide drugs. Advanced Technologies. 2017, 6, 58-71. 9. Isik, K.; Özdemir-Kocak, F. Antimicrobial activity screening of some sulfonamide derivatives on some Nocardia species and isolates. Microbiol Res. 2009, 164, 49-58. 10. Zimecki, M.; Bąchor, U.; Mączyński, M. Isoxazole Derivatives as Regulators of Immune Functions. Molecules. 2018, 23, 2724. 11. Barmade, M.A.; Murumkar, P.R.; Sharma, M.K.; Yadav, M.R. Medicinal Chemistry Perspective of Fused Isoxazole Derivatives. Curr Top Med Chem. 2016, 16, 2863-2883. 12. Kapadiya, K.M.; Kavadia, K.M.; Manvar, P.A.; Khunt, R.C. Synthesis of Nitrogen and Oxygen based Pyrazole Derivatives and Its Antitubercular and Antimicrobial Activity. Anti-Infective Agents. 2015, 13, 1-10. 13. Nasr, T.; Bondock, S.; Eid, S. Design, synthesis, antimicrobial evaluation and molecular docking studies of some new 2,3- dihydrothiazoles and 4-thiazolidinones containing sulfisoxazole. Journal of Enzyme Inhibition and Medicinal Chemistry. 2015, 31, 236-246. 14. Solanki, P.V.; Uppelli, S.B.; Padaki, S.A.; Anekal, D.; Dahale, S.B.; Bembalkar, S.R.; Mathad, V.T. A Facile Approach for the Synthesis of Highly Pure Immunomodulator Drugs-Leflunomide and Teriflunomide: A Robust Strategy to Control Impurities. World Journal of Pharmaceutical Sciences. 2015, 13, 2265-2272. 15. Supuran, C.T. Special issue: Sulfonamides. Molecules. 2017, 22, 1-5. 16. Capasso, C.; Supuran, C.T. Sulfa and trimethoprim-like drugs- antimetabolites acting as carbonic anhydrase, dihydropteroate synthase and dihydrofolate reductase inhibitors. J. Enzym. Inhib. Med. Chem. 2014, 29, 379-387. 17. Golbraikh, A.; Wang, X.S.; Zhu, H.; Tropsha, A. Predictive QSAR Modeling: Methods and Applications in Drug Discovery and Chemical Risk Assessment. In Handbook of Computational Chemistry; Leszczynski, J., Kaczmarek-Kedziera, A., Puzyn, T., Papadopoulos, M., Reis, H., Shukla, M., Eds.; Springer, Cham. 2017, pp 2303-2340. 18. Khan, A.U. Descriptors and their selection methods in QSAR analysis: paradigm for drug design. Drug Discovery Today, 2016, 21, 1291-1302. 19. Huang, T.; Sun, G.; Zhao, L.; Zhang, N.; Zhong, R.; Peng, Y. Quantitative Structure-ActivityRelationship (QSAR) Studies on theToxic Effects of NitroaromaticCompounds (NACs): A Systematic Review. Int. J. Mol. Sci. 2021, 22, 8557. 20. Hodyna, D.M.; Kovalishyn, V.V.; Blagodatnyi, V.M.; Bondarenko, S.P.; Mrug, G.P.; Frasinyuk, M.S.; Metelytsia, L.O. Cytisine derivatives as new anti-Escherichia coli agents: in silico and in vitro studies. Ukr. Bioorg. Acta. 2021, 16, 29-37. 21. Pavliuk, O.V.; Holovatiuk, V.M.; Bezugly, Yu.V.; Kashkovsky, V.I. Synthesis of new sulfonylamide derivatives of isoxazole via ring- closing metathesis. Dopov. Nac. akad. nauk Ukr., 2015, 3, 127-134. 22. Marus, E.M.; Elphick, J.R.; Bailey, H.C. A New Toxicity Test Using the Freshwater Copepod Cyclops vernalis. Bulletin of Environmental Contamination and Toxicology. 2015, 95, 357-362. 23. Gustinasari, K.; Sługocki, Ł.; Czerniawski, R.; Pandebesie, E.S.; Hermana, J. Acute toxicity and morphology alterations of glyphosate-based herbicides to Daphnia magna and Cyclops vicinus. Toxicol Res. 2020, 37, 197-207. 24. Baumann, J.; Sakka, Y.; Bertrand, C.; Köser, J.; Filser, J. Adaptation of the Daphnia sp. acute toxicity test: miniaturization and prolongation for the testing of nanomaterials. Environ Sci Pollut Res Int. 2014, 21, 2201-2213. 25. Okamoto, A.; Yamamuro, M.; Tatarazako, N. Acute toxicity of 50 metals to Daphnia magna. Journal of Applied Toxicology. 2015, 35, 824-830. 26. Passino, D.R.; Smith, S. Acute bioassays and hazard evaluation of representative contaminants detected in Great Lakes fish. Enviromental Toxicology and Chemistry. 1987, 6, 901-907. 27. Bauer, A.W.; Kirby, W.M.; Sherris, J.C.; Turck, M. Antibiotic susceptibility testing by a standardized single disk method. American Journal of Clinical Pathology. 1966, 45, 493-496. 28. Organisation for Economic Co-operation and Development. 2004. Test No. 202: Daphnia sp. acute toxicity test. OECD Guidelines for the Testing of Chemicals. Paris, France. ISSN 1814-9758. Ukr. Bioorg. Acta, 2022, Vol. 17, N 2 30 Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка Д.М. Година*, О.В. Павлюк, М.М. Баран, В.О. Євдокименко, В.В. Ковалішин, Л.О. Метелиця Інститут біоорганічної хімії та нафтохімії ім. В.П. Кухаря НАН України, Київ, Україна Резюме: Розроблені за допомогою веб-платформи OCHEM та раніше опубліковані QSAR-моделі були використані для дослідження та розробки нових похідних ізооксазолу як антимікробних агентів. На основі створеного віртуального набору перспективних похідних ізооксазолу відібрано низку потенційних антибактеріальних агентів для синтезу та подальших досліджень. Розроблено зручну послідовність синтезу вихідних ізооксазоловмісних сульфоніламідів та препаративні методи синтезу цільових сульфоніламідів ізоксазолового ряду, зокрема з використанням реакцій метатезису із закриттям циклу. Результати in vitro оцінки антимікробної активності синтезованих сполук із прогнозованою високою активністю показали, що ряд ізооксазоловмісних сульфоніламідів є перспективними антимікробними засобами з широким спектром антибактеріальної дії, особливо проти мультирезистентних бактеріальних патогенів E. coli, A. baumannii та S. aureus. Дослідження in vivo гострої токсичності синтезованих сполук на біомоделі D. magna як відомому біосенсорі засвідчили, що більшість ізооксазоловмісних сульфоніламідів можна віднести до класу малотоксичних речовин згідно з класифікацією, розробленою Passino та Smith для гідробіонтів. Ключові слова: QSAR; антибактеріальна активність; ізооксазол; сульфаніламід; токсичність.
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spelling oai:ojs2.bioorganica.com.ua:article-322026-07-19T14:56:53Z Isoxazole-containing sulfanilamides as new antibacterial agents: in silico study, synthesis and in vitro evaluation Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка Hodyna, Diana M. Pavliuk, Oleksandr V. Baran, Maria M. Yevdokymenko, Vitaliy O. Kovalishyn, Vasyl V. Metelytsia, Larysa O. QSAR antibacterial activity isoxazole sulfanilamide QSAR антибактеріальна активність ізооксазол сульфаніламід токсичність The QSAR models previously created by the OCHEM web platform were used for the research and design of novel isoxazole derivatives as antimicrobial agents. Based on the created virtual set of promising isoxazole derivatives, a number of potential antibacterial agents were selected for synthesis and further research. A convenient synthetic sequence for obtaining initial isoxazole-containing sulfonylamides and preparative methods for the synthesis of target sulfonylamides of the isoxazole series, in particular, using ring-closing metathesis reactions, were worked out. The results of in vitro antimicrobial activity evaluation of synthesized compounds with predicted high activity showed that a series of isoxazole-containing sulfonylamides are promising antimicrobial agents with a wide spectrum of antibacterial action, especially against multidrug-resistant E. coli, A. baumannii and S. aureus bacterial pathogens. In vivo assessment of the acute toxicity of the studied compounds on the D. magna as a known biosensor proved that most of the studied isoxazole derivatives can be attributed to the class of slightly toxic substances according to the classification developed by Passino and Smith for hydrobionts Розроблені за допомогою веб-платформи OCHEM та раніше опубліковані QSAR-моделі були використані для дослідження та розробки нових похідних ізооксазолу як антимікробних агентів. На основі створеного віртуального набору перспективних похідних ізооксазолу відібрано низку потенційних антибактеріальних агентів для синтезу та подальших досліджень. Розроблено зручну послідовність синтезу вихідних ізооксазоловмісних сульфоніламідів та препаративні методи синтезу цільових сульфоніламідів ізоксазолового ряду, зокрема з використанням реакцій метатезису із закриттям циклу. Результати in vitro оцінки антимікробної активності синтезованих сполук із прогнозованою високою активністю показали, що ряд ізооксазоловмісних сульфоніламідів є перспективними антимікробними засобами з широким спектром антибактеріальної дії, особливо проти мультирезистентних бактеріальних патогенів E. coli, A. baumannii та S. aureus. Дослідження in vivo гострої токсичності синтезованих сполук на біомоделі D. magna як відомому біосенсорі засвідчили, що більшість ізооксазоловмісних сульфоніламідів можна віднести до класу малотоксичних речовин згідно з класифікацією, розробленою Passino та Smith для гідробіонтів. V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the National Academy of Sciences of Ukraine 2022-12-30 Article Article application/pdf https://bioorganica.com.ua/index.php/journal/article/view/32 10.15407/bioorganica2022.02.023 Ukrainica Bioorganica Acta; Vol. 17 No. 2 (2022): Ukrainica Bioorganica Acta; 23-30 Ukrainica Bioorganica Acta; Том 17 № 2 (2022): Ukrainica Bioorganica Acta; 23-30 1814-9766 1814-9758 10.15407/bioorganica2022.02 en https://bioorganica.com.ua/index.php/journal/article/view/32/63 Copyright (c) 2022 Diana M. Hodyna, Oleksandr V. Pavliuk, Maria M. Baran, Vitaliy O. Yevdokymenko, Vasyl V. Kovalishyn, Larysa O. Metelytsia https://creativecommons.org/licenses/by/4.0
spellingShingle QSAR
антибактеріальна активність
ізооксазол
сульфаніламід
токсичність
Hodyna, Diana M.
Pavliuk, Oleksandr V.
Baran, Maria M.
Yevdokymenko, Vitaliy O.
Kovalishyn, Vasyl V.
Metelytsia, Larysa O.
Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title_alt Isoxazole-containing sulfanilamides as new antibacterial agents: in silico study, synthesis and in vitro evaluation
title_full Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title_fullStr Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title_full_unstemmed Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title_short Ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
title_sort ізооксазоловмісні сульфонаміди як нові антибактеріальні агенти: in silico дослідження, синтез та in vitro оцінка
topic QSAR
антибактеріальна активність
ізооксазол
сульфаніламід
токсичність
topic_facet QSAR
antibacterial activity
isoxazole
sulfanilamide
QSAR
антибактеріальна активність
ізооксазол
сульфаніламід
токсичність
url https://bioorganica.com.ua/index.php/journal/article/view/32
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