Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності

This research was aimed at the synthesis and study of biological activity of the carboxamides of tricyclic heteroaromatic systems, acridone, phenazine and thioxanthone, containing the aliphatic and aromatic cationic substituents at amide fragment. These heterocyclic cores are DNA intercalating agent...

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Datum:2020
Hauptverfasser: Kostina, Valentina G., Alexeeva, Inna V., Lysenko, Nadia A., Negrutska, Valentina V., Dubey, Igor Y.
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Sprache:Englisch
Veröffentlicht: V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the National Academy of Sciences of Ukraine 2020
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Ukrainica Bioorganica Acta
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author Kostina, Valentina G.
Alexeeva, Inna V.
Lysenko, Nadia A.
Negrutska, Valentina V.
Dubey, Igor Y.
author_facet Kostina, Valentina G.
Alexeeva, Inna V.
Lysenko, Nadia A.
Negrutska, Valentina V.
Dubey, Igor Y.
author_institution_txt_mv [ { "author": "Valentina G. Kostina", "institution": "Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine" }, { "author": "Inna V. Alexeeva", "institution": "Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine" }, { "author": "Nadia A. Lysenko", "institution": "Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine" }, { "author": "Valentina V. Negrutska", "institution": "Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine" }, { "author": "Igor Y. Dubey", "institution": "Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine" } ]
author_sort Kostina, Valentina G.
baseUrl_str https://bioorganica.com.ua/index.php/journal/oai
collection OJS
datestamp_date 2026-07-19T14:56:52Z
description This research was aimed at the synthesis and study of biological activity of the carboxamides of tricyclic heteroaromatic systems, acridone, phenazine and thioxanthone, containing the aliphatic and aromatic cationic substituents at amide fragment. These heterocyclic cores are DNA intercalating agents, whereas the introduction of cationic groups provides additional ionic interactions of the ligands with their biological targets, such as DNA and enzymatic complexes of the system of nucleic acids biosynthesis. A convenient way of the introduction of such groups is a modification of heterocyclic carboxamides. A small library of new cationic amide derivatives of acridone-4-, phenazine-1- and thioxanthone-4-carboxylic acids was obtained. They were synthesized in 37-81% yield by mild and selective quaternization of the nitrogen atoms at N,N-dimethylaminoalkyl (alkyl = ethyl, propyl) and pyridylmethyl fragments of the neutral N-functionalized carboxamides with methyl iodide. Tricyclic heteroaromatic cores were not affected. Convenient protocol for the synthesis of thioxanthone-4-carboxylic acid (TCA) based on the reaction of 2-mercaptobenzoic and 2-iodobenzoic acids followed by cyclization of the intermediate was developed (yield 79%). A series of new N-functionalized neutral amides of TCA, the precursors of corresponding cationic carboxamide, were also obtained via the reaction of acyl chloride with amines. Preliminary in vitro testing of four compounds as potential antitumor agents in U87MG tumor cell culture (human malignant glioma) demonstrated their significant antiproliferative activity at low micromolar concentrations, with growth inhibition values GI50 in the range 1.7-11 µM. These results suggest that cationic carboxamides of tricyclic heteroaromatic systems are promising scaffolds for the design of new antitumor drugs.
doi_str_mv 10.15407/bioorganica2020.01.034
first_indexed 2025-07-17T12:19:53Z
format Article
fulltext ISSN 1814-9758. Ukr. Bioorg. Acta, 2020, Vol. 15, N 1 UDC 547.8:615.277.3 DOI: https://doi.org/10.15407/bioorganica2020.01.034 34 RESEARCH ARTICLE Сationic carboxamide derivatives of tricyclic heteroaromatic compounds: synthesis and preliminary evaluation of antiproliferative activity Valentina G. Kostina, Inna V. Alexeeva, Nadia A. Lysenko, Valentina V. Negrutska, Igor Y. Dubey* Institute of Molecular Biology and Genetics of the NAS of Ukraine, 150 Zabolotnogo St., Kyiv, 03680, Ukraine Abstract: This research was aimed at the synthesis and study of biological activity of the carboxamides of tricyclic heteroaromatic systems, acridone, phenazine, and thioxanthone, containing the aliphatic and aromatic cationic substituents at amide fragment. These heterocyclic cores are DNA intercalating agents, whereas the introduction of cationic groups provides additional ionic interactions of the ligands with their biological targets, such as DNA and enzymatic complexes of the system of nucleic acids biosynthesis. A convenient way of the introduction of such groups is a modification of heterocyclic carboxamides. A small library of new N-substituted cationic amide derivatives of acridone-4-, phenazine-1- and thioxanthone-4-carboxylic acids was obtained. They were synthesized in 37-81% yield by mild and selective quaternization of the nitrogen atoms at N,N-dimethylaminoalkyl (alkyl = ethyl, propyl) and pyridylmethyl fragments of the neutral N-functionalized carboxamides with methyl iodide. Tricyclic heteroaromatic cores were not affected. Convenient protocol for the synthesis of thioxanthone-4-carboxylic acid (TCA) based on the reaction of 2-mercaptobenzoic and 2-iodobenzoic acids followed by cyclization of the intermediate was developed (yield 79%). A series of new N-functionalized neutral amides of TCA, the precursors of corresponding cationic carboxamide, were also obtained via the reaction of acyl chloride with amines. Preliminary in vitro testing of four compounds as potential antitumor agents in U87MG tumor cell culture (human malignant glioma) demonstrated their significant antiproliferative activity at low micromolar concentrations, with growth inhibition values GI50 in the range 1.7-11 µM. These results suggest that cationic carboxamides of tricyclic heteroaromatic systems are promising scaffolds for the design of new antitumor drugs. Keywords: acridone; phenazine; thioxanthone; carboxamides; antitumor agents. Introduction Condensed tricyclic heteroaromatic systems are privileged scaffolds for the design of therapeutic agents for the treatment of various diseases [1-5]. In particular, a broad variety of antitumor, antibacterial, and antiviral drugs belong to this class of compounds, including the derivatives of acridine, phenazine, and thioxanthone. In most cases, such compounds target the cellular enzymatic systems of nucleic acids biosynthesis. Small molecules based on condensed tricyclic heterocycles were reported as efficient Received: Revised: Accepted: Published online: 20.05.2020 29.05.2020 12.06.2020 30.06.2020  Corresponding author. Tel.: +380-44-200-0379; e-mail: dubey@imbg.org.ua (I. Y. Dubey) ORCID: 0000-0003-4023-4293 inhibitors of a number of enzymes involved in nucleic acids metabolism, including e.g. DNA and RNA polymerases [6], topoisomerases [7-19], and telomerase [20-25]. The majority of non-nucleoside inhibitors of the enzymes of nucleic acid biosynthesis are based on heteroaromatic polycyclic scaffolds. Their effect is usually associated with interaction with DNA (duplex and quadruplex structures) via intercalation or groove binding, or with DNA-enzyme complexes [26-31]. It should be noted that the planar aromatic systems of acridines and acridones, phenazines, thioxanthones, and similar molecules allow efficient intercalation into DNA via the π-π-stacking with electronic systems of nucleic base pairs [11, 12, 32, 33]. Easily available functionalized tricyclic heteroaromatic carboxamides containing N-alkyl and N-aryl substituents have been extensively studied as potential anticancer, antibacterial, and antiviral drugs [8-10, 16, 18, 20, 24]. Important factors influencing their biological activity are © Kostina V. G. et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Ukrainica Bioorganica Acta www.bioorganica.org.ua mailto:dubey@imbg.org.ua ISSN 1814-9758. Ukr. Bioorg. Acta, 2020, Vol. 15, N 1 35 Important factors influencing their biological activity are the structure of heterocycle, the nature of amide substituent, and the position of the carboxamide group in the core molecule [10, 16]. Biological activity of carboxamide derivatives of acridine and phenazine has been investigated for several decades. Carboxamides containing the NHCH2CH2NMe2 pharmacophore, such as N-[2-(dimethylamino)-ethyl] carboxamide derivatives of phenazine [34], acridine (DACA) [8] and 9-aminoacridine [35] were identified as efficient antitumor agents and topoisomerase inhibitors. N-arylamides of acridone-4-carboxylic acid are active against hepatitis C virus infection inhibiting the transcription and RNA replication [36]. N-pyridyl derivatives of acridone carboxamides were found to inhibit NS3 helicase [36, 37], telomerase [24], and topoisomerase I [38]. N-aryl(hetaryl)-substituted amides of phenazine-1- carboxylic acid appeared to be efficient antimicrobial agents, including the compounds active against drug- resistant Mуcobacterium tuberculosis strains [39, 40]. Much less attention has been paid to the studies of bioactivity of compounds based on thioxanthone, a close acridone analogue. Among thioxanthone derivatives, antitumor agents have been reported [41-43], although we were unable to find have not found in the literature data on the activity of thioxanthone carboxamides. We have previously obtained a series of carboxamides of acridone and phenazine whose amide groups were functionalized with N,N-dimethylaminoalkyl and pyridyl fragments [38]. The introduced basic functions can be protonated under physiological conditions to form cationic moieties. Structure design was based on the fact that the attachment of basic/cationic substituents to DNA-intercalating ligands could enhance their binding to DNA or enzymatic complexes formed by the enzymes of nucleic acids biosynthesis (topoisomerase, telomerase, DNA, and RNA polymerases, etc.) by additional interactions with either anionic DNA phosphates or acidic groups within the enzymes. At the same time, the aromatic pyridyl residues could also interact with nucleic acids bases or aromatic amino acids via the hydrophobic mechanism further enhancing the binding of ligands to their molecular targets. Phenazine and acridone derivatives containing aromatic pyridyl fragments were found to inhibit the topoisomerase I at 100 μM concentration, whereas their analogues with aliphatic basic substituents at carboxamide fragment were less efficient [38]. At the same time, the free core heterocycles and their non-substituted carboxamides are inactive against topoisomerase [38] and telomerase [24]. Thus, the introduction of protonable basic substituents significantly increased the biological activity of tricyclic carboxamides, and we could expect that the modification of core heterocycles with cationic fragments would result in even more efficient inhibitors with potential antitumor and/or antibacterial properties. In this work, we have significantly extended the range of N-substituted tricyclic carboxamides as potential antitumor agents. Results and discussion Before we have synthesized a set of neutral carboxamide derivatives of acridone 1a-e and phenazine 2a-e Het -COOH Het -COCl Het -CONH-R Het -CONH-R1 i ii iii 1-3 a-e 1-3 f-j N H O O N H R(R1) N N O N H R(R1) S O O N H R(R1) 1 2 3 R: N N N N N R1: a b c d e f g h i j N N + N N + N + + + Scheme 1. Synthesis of neutral (a-e) and cationic (f-j) derivatives of tricyclic carboxamides. (i). SOCl2, toluene, Py, Δ; (ii). R-NH2, triethylamine, rt; (iii) methyl iodide, MeOH or CH3CN, 20-50 °C, 37-81%. V. G. Kostina, I. V. Alexeeva et al. 36 SH COOH I COOH S COOH COOH S COOH O + i ii Scheme 2. Synthesis of thioxanthone-4-carboxylic acid. (i). K2CO3, DMF, 60 °С, 4 h; (ii). conc. H2SO4, 100 °С, 2.5-3 h, 79%. (Scheme 1). Their amide groups were functionalized with N,N-dimethylamino and isomeric pyridyl groups attached via the short (1-3 carbon atoms) alkyl linkers [38]. Taking into account the above considerations, we have decided to prepare cationic derivatives of tricyclic heterocycles. One of the possible ways to obtain compounds of this type would be a quaternization of nitrogen atoms of basic aliphatic and aromatic substituents present in the already prepared carboxamides 1,2a-e. We have also decided to extend the range of tricyclic heteroaromatic systems by adding their structural analogue, thioxanthone. Carboxamides 1,2a-e have been previously synthesized from carboxylic acids [38]. To obtain analogues based on thioxanthone, first of all, we have elaborated an efficient procedure for the synthesis of thioxanthone-4-carbocylic acid (TCA). This procedure is similar to that commonly used for the synthesis of acridone-4-carboxylic acid [44] and is based on intramolecular cyclization of bis-dicarbo- xyphenyl sulfide formed in the reaction of 2-mercapto- benzoic and 2-iodobenzoic acids. We have modified a published protocol [45] using potassium carbonate as a base instead of NaOH, and 2-iodobenzoic acid in place of 2-chlorobenzoic acid. The condensation of two acids at 60 °С followed by the intermediate cyclization by heating in conc. sulfuric acid afforded TCA in 79% yield (Scheme 2). The use of less reactive bromobenzoic acid in the condensation required heating at a higher temperature (100 °С) and resulted in a significantly lower total yield of target tricyclic carboxylic acid (below 50%). The synthesis of new N-substituted carboxamides of thioxanthone was based on our previous approach developed for phenazine and acridone series [38]. This convenient one-flask process consisted in the formation of acyl chloride followed by its reaction with amine. Target neutral amides 3a-e were obtained by the reaction of TCA chloride with corresponding amines in the presence of TEA (Scheme 1). The neutral compounds 1-3a-e were found to easily react with methyl iodide, and the quaternization of nitrogen atoms in amide substituents allowed obtaining a series of novel cationic derivatives 1-3f-j. N-Alkylation reaction was carried out in polar solvent (methanol, acetonitrile) at room temperature or with some heating (up to 50 °C). Since salt- type products precipitated from the reaction mixture, the use of crude amides instead of analytically pure samples did not significantly affect the total yield of iodides from starting carboxylic acids. The primary centres of N-methylation are obviously tertiary aliphatic (AlkNMe2) and pyridine nitrogen atoms in carboxamide fragments. Only one additional methyl group signal appeared in 1H NMR spectra of all cationic derivatives. It is known that the quaternization of phenazine under the applied conditions does not occur, but possible alkylation of endocyclic nitrogen or exocyclic oxygen atom of the acridone ring could not be excluded. However, NMR spectra of the obtained derivatives and their comparison with the spectral data of reference compounds confirmed that compounds 1f-j do not contain N-methyl group located at acridine ring, as one-proton low-field signals at δ ≥ 12 ppm characteristic of the 10-NH ring proton of neutral carboxamides of acridone carboxylic acid [44] are observed in the spectra. NMR spectra of cationic TCA carboxamides also contain the signals of methyl groups only from trimethylammonium or N-methylpyridinium residues. Cationic aliphatic trimethylammonium group of compounds 1-3f-g is represented by singlets at 3.1-3.4 ppm, whereas the spectra of pyridinium derivatives 1h-j, 2i, and 3i contain the signals of cationic N-methyl group located at 4.2-4.4 ppm. Low-field shift of signals of the cationic fragments is observed in NMR spectra of the salts, as compared to corresponding neutral carboxamides. In general, the deshielding effect of cationic structures results in the shift of CONH and methylene protons (low- field shift for 0.1-0.5 and 0.15-0.25 ppm, respectively) in comparison with neutral precursors. Thus, we have prepared a series of 11 new compounds containing trimethylammonium group attached via the ethyl or propyl linker, and compounds with isomeric N-methylpyridinium fragments. This small library would allow analyzing the structure-activity relationship among the derivatives of three tricyclic systems – phenazine, acridone, and thioxanthone. Investigation of antitumor activity of compounds in vitro Preliminary evaluation of the antiproliferative activity of some new compounds was performed in vitro in the culture of U87MG tumor cells (human malignant glioma). To determine the effect of quaternization on biological activity, the representative pairs of the derivatives of two different heterocycles, acridone and phenazine, containing the same pyridyl and N-metyylpyridinium fragments (1d, i and 2d, i) were tested. The cells were cultured in 24-well plates and treated for 3 days by drugs added at concentrations ranging from 20 to 0.5 µM. ISSN 1814-9758. Ukr. Bioorg. Acta, 2020, Vol. 15, N 1 37 In vitro cytostatic activity of compounds towards cancer cell line was determined using the classic MTT assay [46]. MTT test is based on the transformation of MTT reagent (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bro- mide) by the mitochondrial dehydrogenase of viable cells into the blue formazan which can then be measured spectrophotometrically. The optical density of the probe is proportional to the number of live cells. From the obtained data, the plots of the number of live cells in the probe as compared to a control (cell growth inhibition level) vs. drug concentration were built, from which the GI50 value was obtained for each tested carboxamide. GI50 was determined as a concentration of drug required for 50% of maximal inhibition of cell proliferation (decreasing cell vitality by 50%) as compared to the non-treated control. Tested carboxamides demonstrated a significant dose- dependent antiproliferative activity towards U87MG cells at low micromolar concentrations, with GI50 below 10 µM for three of four compounds (Table 1). Table 1. Antiproliferative activity of compounds in the culture of U87MG cells (M ± SD). Compound GІ50, µM 1d 11 ± 2 1i 7.2 ± 1.4 2d 1.7 ± 0.3 2i 5.5 ± 0.9 It is interesting to note that the cationic acridone derivative 1i (GI50 7.2 µM) was more active than its neutral analogue 1d (GI50 11 µM), whereas for the pair of phenazine carboxamides the cationic compound 2i was three times less efficient as compared to its non-charged counterpart 2d (GI50 5.5 and 1.7 µM, respectively). The opposite effects of quaternization on the biological activity of acridone and phenazine carboxamides may be due to different molecular targets of the studied compounds and/or different modes of inhibitor-target interaction. However, at this moment we have only limited information on biological properties of a small set of derivatives, and molecular mechanisms of bioactivity of new compounds require further investigation. In particular, it will include the studies on the inhibition of the enzymes of nucleic acid biosynthesis and ligand interactions with nucleic acids. It would be also interesting to access the antibacterial activity of these derivatives. Conclusions A convenient protocol was proposed for the synthesis of cationic N-functionalized carboxamide derivatives of acridone, phenazine, and thioxanthone, the tricyclic systems with DNA-intercalating properties. A series of compounds with aliphatic and aromatic cationic substituents were obtained. Their heteroaromatic cores contained the carboxamide functions modified with N-methylpyridiniumyl and N,N,N-trimethylammonium groups. Preliminary evaluation of the antiproliferative activity of several compounds in tumor cell culture in vitro demonstrated that cationic tricyclic carboxamides could be suitable scaffolds for the development of new efficient antitumor agents. Experimental section Reagents and solvents for synthesis were purchased from UkrOrgSynthez (Ukraine), Fluka (Switzerland), and Sigma- Aldrich (Germany). Solvents were purified and dried by standard methods. DMSO for molecular biology and MTT reagent (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazo- lium bromide) were obtained from Sigma (USA). 1H NMR spectra were recorded on a Mercury-400 instrument (400 MHz, Varian, USA) in DMSO-d6 with tetramethyl- silane as an internal standard; chemical shifts are given in ppm. Thin-layer chromatography (TLC) was performed on Silica gel 60F254 plates (Merck, Germany) in following solvent systems: CHCl3/MeOH 9:1 (A); CHCl3/MeOH 1:1 (B); CHCl3/HOAc/acetone 10:0.125:0.125 (C); i-PrOH/NH4ОН/H2O 7:1:2 (D), CHCl3/HOAc/acetone (E). Melting points were determined using a Boethius PNMK 05 apparatus (Nagema, Germany). Chemistry Acridone and phenazine carboxamide derivatives 1,2a-e were obtained as previously reported [38]. 9-Oxo-9H-thioxanthene-4-carboxylic acid (TCA). The mixture of 2-mercaptobenzoic acid (1.16 g, 7.53 mmol), 2-iodobenzoic acid (1.89 g, 7 mmol) and powdered К2СО3 (2.09 g, 15.2 mmol) in 10 ml of dry DMF was stirred at 60 °С for 7.5 h. After cooling, 60 ml of water was added and insoluble material was filtered off. The filtrate was neutralized with 10% HCl, the precipitate was collected by filtration, washed with water and dried. The obtained crude 2-(2-carboxyphenylthio)benzoic acid (1.94 g) was kept in 7.5 ml of conc. sulfuric acid for 2.5-3 h at 100 °С (control TLC in system E). The reaction mixture was cooled and poured into ice-cold water, and the precipitate was filtered and extensively washed with water. After its re-precipitation from 20 ml of 10% NаОН with 10% НСl the crude product (1.52 g) was crystallized from DMF. Yield of yellow crystals 79%, mp 332-335 °С. 1Н NMR (400 MHz, DMSO-d6) δ 8.78 (d, 1H, J 8.0 Hz, Ar), 8.49 (d, 1H, J 7.6 Hz, Ar), 8.43 (d, 1H, J 8.0 Hz, Ar), 7.92 (d, 1H, J 8.0 Hz, Ar), 7.81 (t, 1H, J 7.2 Hz, Ar), 7.70 (t, 1H, J 7.6 Hz, Ar), 7.61 (t, 1H, J 7.6 Hz, Ar). General procedure for the synthesis of N-substituted amides of thioxanthone-4-carboxylic acid (3а-e). 0.5 Mmol (128 mg) of TCA was suspended in 3 ml of dry toluene, and 50 µl of thionyl chloride and 60 µl of dry pyridine (0.7 mmol each) were added with stirring and the mixture was heated at 90 °С for 1.5-2 h. After cooling to room temperature corresponding amine (1.25 mmol) and triethylamine (1.25 mmol) were added, and the mixture was V. G. Kostina, I. V. Alexeeva et al. 38 stirred at ambient temperature until the reaction was complete (control TLC). The mixture was evaporated, the residue was treated with 10 ml of chloroform and washed with saturated NаНСО3 (3×5 ml). The organic phase was dried over Nа2SО4 and evaporated to dryness. The product was crystallized from the appropriate solvent. 9-Oxo-9H-thioxanthene-4-carboxylic acid (2- dimethylaminoethyl)-amide (3a) was obtained from 146 mg (0.57 mmol) TCA and 138 µl (1.26 mmol) N,N-dimethylaminoethylene diamine. Yield 26%, mp 160-163 °С (acetonitrile). 1Н NMR (400 MHz, DMSO-d6) δ 8.72 (br t, 1H, CONH), 8.63 (d, 1H, J 8.0 Hz, Ar), 8.42 (dd, 1H, J 8.0 Hz, 0.8 Hz, Ar), 7.98 (d, 1H, J 6.4 Hz, Ar), 7.85 (m, 1H, Ar), 7.79 (t, 1H, J 7.6 Hz, Ar), 7.66 (t, 1H, J 8.4 Hz, Ar), 7.58 (t, 1H, J 7.6 Hz, Ar), 3.44 (m, 2H, NHCH2), 2.40 (t, 2H, J 6.4 Hz, CH2N), 2.21 (s, 6H, NMe2). 9-Oxo-9H-thioxanthene-4-carboxylic acid (3-dimethyl- aminopropyl)-amide (3b) was obtained from 128 mg (0.5 mmol) of ТCA and 120 µl (1.25 mmol) of N,N-dimetylaminopropylene-1,3- diamine. Yield 58 mg (34%), mp 162-165 °С (acetonitrile). 1Н NMR (400 MHz, DMSO-d6) δ 8.80 (br t, 1H, J 5.6 Hz, СОNH), 8.62 (dd, 1H, J 8.4 Hz, 1.2 Hz, Ar), 8.43 (dd, 1H, J 8.0 Hz, 0.8 Hz, Ar), 7.99 (dd, 1H, J 7.4 Hz, 1.2 Hz, Ar), 7.88-7.84 (m, 1H, Ar), 7.80-7.76 (m, 1H, Ar), 7.66 (t, 1H, J 7.6 Hz, Ar), 7.59 (t, 1H, J 7.6 Hz, Ar), 3.35 (m, 2H, NHCH2), 2.34 (t, 2H, J 7.2 Hz, CH2N), 2.17 (s, 6H, NMe2), 1.70 (t, 2H, J 7.2 Hz, CH2). 9-Oxo-9H-thioxanthene-4-carboxylic acid (pyridin-2- ylmethyl)-amide (3c) was obtained from o-aminomethylpyridine. Yield 19%, mp 192-194 °С (EtOH). 1Н NMR (400 MHz, DMSO-d6) δ 9.45 (t, 1H, J 6.0 Hz, СОNH), 8.65 (dd, 1H, J 8.4 Hz, 1.2 Hz, Ar), 8.55 (d, 1H, J 4.8 Hz, Ar), 8.43 (dd, 1H, J 8.4 Hz, 1.2 Hz, Ar), 8.16 (dd, 1H, J 7.6 Hz, 1.6 Hz, Ar), 7.87-7.78 (m, 3H, Ar), 7.70 (t, 1H, J 7.6 Hz, Ar), 7.59 (dt, 1H, J 8.0 Hz, 1.2 Hz, Ar), 7.43 (d, 1H, J 7.6 Hz, Ar), 7.31 (dd, 1H, J 7.6 Hz, 6.8 Hz, Ar), 4.57 (d, 2H, J 6.0 Hz, CH2). 9-Oxo-9H-thioxanthene-4-carboxylic acid (pyridin-3-yl- methyl)-amide (3d) was obtained from 207 mg (0.81 mmol) of TCA and 147 µl (1.45 mmol) of m-aminomethylpyridine. Yield 152 mg (54%), mp 194-198 °С (acetonitrile/i-PrOH). 1Н NMR (400 MHz, DMSO-d6) δ 9.41 (br t, 1H, J 4.4 Hz, СОNH), 8.65 (m, 2H, Ar), 8.51 (d, 1H, J 3.2 Hz, Ar), 8.43 (d, 1H, J 6.4 Hz, Ar), 8.11 (d, 1H, J 6.0 Hz, Ar), 7.88-7.75 (m, 3H, Ar), 7.67 (t, 1H, J 6.4 Hz, Ar), 7.57 (t, 1H, J 6.0 Hz, Ar), 7.44-7.40 (m, 1H, Ar), 4.57 (d, 2H, J 4.8 Hz, CH2). 9-Oxo-9H-thioxanthene-4-carboxylic acid (pyridin-4- ylmethyl)-amide (3e) was obtained from p-aminomethylpyridine. Yield 30%, mp 194-197 °С (EtOH). 1Н NMR (400 MHz, DMSO-d6) δ 9.45 (t, 1H, J 6.0 Hz, СОNH), 8.66 (dd, 1H, J 7.6 Hz, 1.2 Hz, Ar), 8.55 (m, 2H, Ar), 8.43 (dd, 1H, J 8.0 Hz, 0.8 Hz, Ar), 8.15 (dd, 1H, J 7.6 Hz, 1.6 Hz, Ar), 7.88-7.85 (m, 1H, Ar), 7.78 (dt, 1H, J 7.6 Hz, 1.2 Hz, Ar), 7.71 (t, 1H, J 7.6 Hz, Ar), 7.60 (dt, 1H, J 7.6 Hz, 1.2 Hz, Ar), 7.40 (dd, 2H, J 4.4 Hz, 1.6 Hz, Ar), 4.57 (d, 2H, J 6.0 Hz, CH2). General procedure for the quaternization of carboxamides. Neutral heterocyclic N-substituted carboxamide 1-3a-e (0.1 mmol) and 150 µl of methyl iodide in 2 ml of methanol or acetonitrile were kept at room temperature or with weak heating (up to 50 °C) until the reaction was complete (control TLC). The precipitated product (1-3f-j) was collected by filtration and crystallized from the appropriate solvent. Trimethyl-{2-[(9-oxo-9,10-dihydroacridine-4-carbonyl)- amino]-ethyl}-ammonium iodide (1f). Yield 75%, mp 260-263 °С (EtOH). 1Н NMR (400 MHz, DMSO-d6) δ 12.26 (s, 1H, NH (Ar)), 9.28 (br t, 1H, СОNH), 8.48 (d, 1H, J 7.6 Hz, Ar), 8.24 (m, 2H, Ar), 7.78- 7.70 (m, 2H, Ar), 7.40 (t, 1H, J 7.6 Hz, Ar), 7.34 (t, 1H, J 7.2 Hz, Ar), 3.80 (m, 2H, NHCH2), 3.61 (br t, 2H, CH2N), 3.19 (s, 9H, N+Me3). Trimethyl-{3-[(9-oxo-9,10-dihydroacridine-4-carbonyl)- amino]-propyl}-ammonium iodide (1g). Yield 64%, mp 262-264 °С (acetonitrile). 1Н NMR (400 MHz, DMSO-d6) δ 12.40 (s, 1H, NH (Ar)), 9.10 (br t, 1H, СОNH), 8.46 (d, 1H, J 8.0 Hz, Ar), 8.27 (m, 1H, Ar), 7.79- 7.71 (m, 2H, Ar), 7.39-7.31 (m, 2H, Ar), 3.45-3.39 (m, 4H, NHCH2, CH2N), 3.19 (s, 9H, N+Me3), 2.05 (br t, 2H, CH2). 1-Methyl-2-{[(9-oxo-9,10-dihydroacridine-4-carbonyl)- amino]-methyl}-pyridinium iodide (1h). Yield 37%, mp 269-273 °С (DMF). 1Н NMR (400 MHz, DMSO-d6) δ 12.10 (s, 1H, NH (Ar)), 9.86 (t, 1H, J 4.8 Hz, СОNH), 9.06 (d, 1H, J 4.8 Hz, Ar), 8.58-8.52 (m, 2H, Ar), 8.44 (d, 1H, J 7.6 Hz, Ar), 8.24 (d, 1H, J 8.4 Hz, Ar), 8.17 (d, 1H, J 8.4 Hz, Ar), 8.06 (m, 1H, Ar), 7.78-7.74 (m, 1H, Ar), 7.68 (d, 1H, J 8.4 Hz, Ar), 7.43 (m, 1H, Hz, Ar), 7.32 (m, 1H, Ar), 5.0 (d, 2H, J 4.8 Hz, CH2), 4.44 (s, 3H, N+Me). 1-Methyl-3-{[(9-oxo-9,10-dihydroacridine-4-carbonyl)- amino]-methyl}-pyridinium iodide (1i). Yield 75%, mp 240-244 °С (acetonitrile). 1Н NMR (400 MHz, DMSO-d6) δ 12.27 (s, 1H, NH (Ar)), 9.73 (br t, 1H, СОNH), 9.06 (s, 1H, Ar), 8.92 (s, 1H, Ar), 8.61 (d, 1H, J 8.8 Hz, Ar), 8.50 (d, 1H, J 7.2 Hz, Ar), 8.39 (d, 1H, J 8.4 Hz, Ar), 8.46 (d,1H, J 8.4 Hz, Ar), 8.13 (s, 1H, Ar), 7.79- 7.77 (m, 2H, Ar), 7.45-7.29 (m, 2H, Ar), 4.78 (d, 2H, J 5.6 Hz, CH2), 4.37 (s, 3H, N+Me). 1-Methyl-4-{[(9-oxo-9,10-dihydroacridine-4-carbonyl)- amino]-methyl}-pyridinium iodide (1j). Yield 66%, mp 206-209 °С (acetonitrile). 1Н NMR (400 MHz, DMSO-d6) δ 12.29 (br s, 1H, NH (Ar)), 9.83 (br s, 1H, СОNH), 8.95 (m, 2H, Ar), 8.45-8.55 (m, 2H, Ar), 8.30- ISSN 1814-9758. Ukr. Bioorg. Acta, 2020, Vol. 15, N 1 39 8.12 (m, 3H, Ar), 7.80-7.65 (m, 2H, Ar), 7.45-7.25 (m, 2H, Ar), 4.86 (br t, 2H, CH2), 4.31 (s, 3H, N+Me). Trimethyl-{2-[(phenazine-1-carbonyl)-amino]-ethyl}- ammonium iodide (2f). Yield 42%, mp 272-276 °С (EtOH/DMF). 1Н NMR (400 MHz, DMSO-d6) δ 10.55 (br t, 1H, СОNH), 8.67 (d, 1H, J 7.2 Hz, Ar), 8.45-8.52 (m, 2H, Ar), 8.32 (d, 1H, J 8.0 Hz, Ar), 8.16-8.05 (m, 3H, Ar), 4.02 (d, 2H, J 6.0 Hz, NHCH2), 3.70 (br t, 2H, CH2N), 3.25 (s, 9H, N+Me3). Trimethyl-{3-[(phenazine-1-carbonyl)-amino]-propyl}- ammonium iodide (2g). Yield 76%, mp 277-280 °С (butanol/DMF). 1Н NMR (400 MHz, DMSO-d6) δ 10.42 (s, 1H, СОNH), 8.67 (d, 1H, J 6.0 Hz, Ar), 8.48 (m, 2H, Ar), 8.32 (d, 1H, J 6.8 Hz, Ar), 8.14-8.01 (m, 3H, Ar), 3.62 (br s, 2H, NHCH2), 3.47 (br t, 2H, CH2 N), 2.17 (s, 9H, N+Me3), 2.15 (br t, 2H, CH2). 1-Methyl-3-{[(phenazine-1-carbonyl)-amino]-methyl}- pyridinium iodide (2i). Yield 81%, mp 236-238 °С (EtOAc). 1Н NMR (400 MHz, DMSO-d6) δ 10.94 (br t, 1H, СОNH), 9.11 (s, 1H, Ar), 8.92 (d, 1H, J 6.0 Hz, Ar), 8.73 (d, 1H, J 8.4 Hz, Ar), 8.66 (d, 1H, J 6.8 Hz, Ar), 8.54 (d, 1H, J 8.0 Hz, Ar), 8.48 (d, 1H, J 8.4 Hz, Ar), 8.34 (d, 1H, J 7.6 Hz, Ar), 8.19 (dd, 1H, J 7.2, 6.0 Hz, Ar), 8.12-8.02 (m, 3H, Ar), 4.97 (d, 2H, J 6.0 Hz, CH2), 4.37 (s, 3H, N+Me). Trimethyl-{2-[(9-oxo-9H-thioxanthene-4-carbonyl)- amino]-ethyl}-ammonium iodide (3f). Yield 39%, mp 267-270 °С (butanol/DMF). 1Н NMR (400 MHz, DMSO-d6) δ 9.12 (br.t, 1H, СОNH), 8.67 (d, 1H, J 7.6 Hz, Ar), 8.44 (d, 1H, J 7.2 Hz, Ar), 8.06 (d, 1H, J 6.0 Hz, Ar), 7.85-7.78 (m, 2H, Ar), 7.73-7.69 (m, 1H, Ar), 7.61 (m, 1H, Ar ), 3.75 (d, 2H, J 6.0 Hz, NHCH2), 3.60 (br t, 2H, CH2N), 3.24 (s, 9H, N+Me3). Trimethyl-{3-[(9-oxo-9H-thioxanthene-4-carbonyl)- amino]-propyl}-ammonium iodide (3g). Yield 52%, mp 263-265 °С (EtOH). 1Н NMR (400 MHz, DMSO-d6) δ 8.90 (br.s, 1H, СОNH), 8.66 (br s, 1H, Ar), 8.43 (br s, 1H, Ar), 8.11 (br s, 1H, Ar), 7.85-7.60 (m, 4H, Ar), 3.52-3.33 (m, 4H, NHCH2, CH2N), 3.09 (s, 9H, N+Me3), 2.05 (br t, 2H, CH2) 1-Methyl-3-{[(9-oxo-9H-thioxanthene-4-carbonyl)- amino]-methyl}-pyridinium iodide (3i). Yield 81%, mp 228-231 °С (MeOH/DMF). 1Н NMR (400 MHz, DMSO-d6) δ 9.57 (br t, 1H, СОNH), 9.06 (s, 1H, Ar), 8.93 (d, 1H, J 5.6 Hz, Ar), 8.68 (d, 1H, J 8.0 Hz, Ar), 8.61 (d, 1H, J 8.4 Hz, Ar), 8.43 (d, 1H, J 8.0 Hz, Ar), 8.23 (d, 1H, J 7.6 Hz, Ar), 8.16 (m, 1H, Ar), 7.85-7.81 (m, 2H, Ar), 7.73 (m, 1H, Ar), 7.62 (m, 1H, Ar), 4.73 (d, 2H, J 5.6 Hz, CH2), 4.39 (s, 3H, N+Me). In vitro antitumor assay. Antiproliferative activity of compounds was evaluated in the culture of human malignant glioma cells (U87MG line). The cells were grown in 24-well plastic plates (ТТР, Switzerland) in CO2-incubator at 37 °C, 5% CO2. The cells (2x103 per well) were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Sigma, USA) supplemented with 2.5% fetal bovine serum (Sigma, USA). In 24 h after cell seeding, tested compounds in DMSO were added to the culture at concentrations 20, 10, 5, 2, 1 and 0.5 µM (final drug concentration in the medium) using a serial dilution approach, and then cells were incubated for 72 h. In all cases, DMSO content in the medium was 0.2%. Preliminary experiments confirmed that DMSO at this concentration did not affect cell growth. The cells cultured in the presence of 0.2% DMSO without drugs were used as a control. After the incubation of cells with or without drugs, the number of viable cells in each well was determined using a standard MTT colorimetric assay [46]. After the treatment wit MTT reagent, optical density in the wells was measured at 570 nm using BioTek ELx800 plate reader (BioTek, USA). Using the absorbance measurements, the percent of growth inhibition as compared with a non-treated control was calculated for each drug concentration. Growth inhibition levels were plotted against inhibitor concentrations, and GI50 parameter (drug concentration giving a 50% growth inhibition in comparison with a control culture) was determined for each compound. Each experiment was performed in triplicate. The data are presented as the mean (M) ± standard deviation (SD). Notes Acknowledgments. The authors are grateful to Dr. O. Balynska for assistance with biological testing of compounds. The authors declare no conflict of interest. Author contributions. V. G. K.: synthesis of compounds, investigation. I. V. A.: investigation, NMR spectra analysis, writing the experimental part (chemistry). N. A. L.: synthesis of compounds. V. V. N.: biological experiments, writing the experimental part (biology). I. Y. D.: supervision, data analysis, writing, and editing the manuscript. References 1. 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Acta, 2020, Vol. 15, N 1 41 Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності В. Г. Костіна, І. В. Алексєєва, Н. А. Лисенко, В. В. Негруцька, І. Я. Дубей* Інститут молекулярної біології і генетики НАН України, вул. Заболотного, 150, Київ, 03680, Україна Резюме: Метою роботи був синтез і вивчення біологічної активності карбоксамідів трициклічних гетероароматичних систем акридону, феназину та тіоксантону, що містять катіонні замісники в амідній функції. Вказані гетероциклічні ядра є ДНК-інтеркаляторами, а введення в них катіонних груп може забезпечити додаткові йонні взаємодії лігандів з їхніми біологічними мішенями, зокрема, ДНК й ферментативними комплексами системи біосинтезу нуклеїнових кислот. Модифікацію вказаних гетероциклів такими групами зручно здійснювати через карбоксамідні похідні. Виходячи з цього, було отримано невелику бібліотеку N-заміщених аліфатичних і ароматичних катіонних похідних амідів акридон-4-, феназин-1- та тіоксантон-4-карбонових кислот. Їх синтезували з виходом 37-81% з використанням м’якої селективної реакції кватернізації йодистим метилом атомів азоту в N,N-диметиламіноалкільних (алкіл = етил, пропіл) і піридилметильних фрагментах нейтральних N-функціоналізованих карбоксамідів. При цьому трициклічні ядра не реагують. Розроблено зручний протокол синтезу тіоксантон-4-карбонової кислоти (ТСА), що ґрунтується на реакції 2-меркаптобензойної та 2-йодбензойної кислот із наступною циклізацією інтермедіату (вихід 79%). Отримано також серію нових нейтральних N-функціоналізованих амідів ТСА, які є прекурсорами відповідних катіонних карбоксамідів, взаємодією її хлорангідриду з амінами. Попереднє тестування чотирьох карбоксамідів in vitro як потенційних протипухлинних засобів проводили в культурі клітин U87MG (злоякісна гліома людини). Сполуки виявили значну антипроліферативну активність у низьких мікромолярних концентраціях; їхні показники інгібування клітинного росту GI50 знаходяться в межах 1.7-11 мкМ. Отримані дані свідчать про те, що катіонні карбоксаміди трициклічних гетероароматичних систем є перспективними скафолдами для дизайну нових протипухлинних препаратів. Ключові слова: акридон; феназин; тіоксантон; карбоксаміди; протипухлинні засоби. 3. Buus, J.; Nielsen, J. Phenazine natural products: biosynthesis, synthetic analogues, and biological activity. Chem. Rev. 2004, 104, 1663-1686. 42. Palmeira, A.; Vasconcelos, M. H.; Paiva, A.; Fernandes, M. X.; Pinto, M.; Sousa, E. Dual inhibitors of P-glycoprotein and tumor cell growth: (re)discovering thioxanthones. Biochem. Pharmacol. 2012, 83, 57-68.
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spelling oai:ojs2.bioorganica.com.ua:article-62026-07-19T14:56:52Z Сationic carboxamide derivatives of tricyclic heteroaromatic compounds: synthesis and preliminary evaluation of antiproliferative activity Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності Kostina, Valentina G. Alexeeva, Inna V. Lysenko, Nadia A. Negrutska, Valentina V. Dubey, Igor Y. acridone phenazine thioxanthone carboxamides antitumor agents акридон феназин тіоксантон карбоксаміди протипухлинні засоби This research was aimed at the synthesis and study of biological activity of the carboxamides of tricyclic heteroaromatic systems, acridone, phenazine and thioxanthone, containing the aliphatic and aromatic cationic substituents at amide fragment. These heterocyclic cores are DNA intercalating agents, whereas the introduction of cationic groups provides additional ionic interactions of the ligands with their biological targets, such as DNA and enzymatic complexes of the system of nucleic acids biosynthesis. A convenient way of the introduction of such groups is a modification of heterocyclic carboxamides. A small library of new cationic amide derivatives of acridone-4-, phenazine-1- and thioxanthone-4-carboxylic acids was obtained. They were synthesized in 37-81% yield by mild and selective quaternization of the nitrogen atoms at N,N-dimethylaminoalkyl (alkyl = ethyl, propyl) and pyridylmethyl fragments of the neutral N-functionalized carboxamides with methyl iodide. Tricyclic heteroaromatic cores were not affected. Convenient protocol for the synthesis of thioxanthone-4-carboxylic acid (TCA) based on the reaction of 2-mercaptobenzoic and 2-iodobenzoic acids followed by cyclization of the intermediate was developed (yield 79%). A series of new N-functionalized neutral amides of TCA, the precursors of corresponding cationic carboxamide, were also obtained via the reaction of acyl chloride with amines. Preliminary in vitro testing of four compounds as potential antitumor agents in U87MG tumor cell culture (human malignant glioma) demonstrated their significant antiproliferative activity at low micromolar concentrations, with growth inhibition values GI50 in the range 1.7-11 µM. These results suggest that cationic carboxamides of tricyclic heteroaromatic systems are promising scaffolds for the design of new antitumor drugs. Метою роботи був синтез і вивчення біологічної активності карбоксамідів трициклічних гетероароматичних систем акридону, феназину та тіоксантону, що містять катіонні замісники в амідній функції. Вказані гетероциклічні ядра є ДНК-інтеркаляторами, а введення в них катіонних груп може забезпечити додаткові йонні взаємодії лігандів з їхніми біологічними мішенями, зокрема, ДНК й ферментативними комплексами системи біосинтезу нуклеїнових кислот. Модифікацію вказаних гетероциклів такими групами зручно здійснювати через карбоксамідні похідні. Виходячи з цього, було отримано невелику бібліотеку N-заміщених аліфатичних і ароматичних катіонних похідних амідів акридон-4-, феназин-1- та тіоксантон-4-карбонових кислот. Їх синтезували з виходом 37-81% з використанням м’якої селективної реакції кватернізації йодистим метилом атомів азоту в N,N-диметиламіноалкільних (алкіл = етил, пропіл)  і піридилметильних фрагментах нейтральних N-функціоналізованих карбоксамідів. При цьому трициклічні ядра не реагують. Розроблено зручний протокол синтезу тіоксантон-4-карбонової кислоти (ТСА), що ґрунтується на реакції 2-меркаптобензойної та 2-йодбензойної кислот із наступною циклізацією інтермедіату (вихід 79%). Отримано також серію нових нейтральних N-функціоналізованих амідів ТСА, які є прекурсорами відповідних катіонних карбоксамідів, взаємодією її хлорангідриду з амінами. Попереднє тестування чотирьох карбоксамідів in vitro як потенційних протипухлинних засобів проводили в культурі клітин U87MG (злоякісна гліома людини). Сполуки виявили значну антипроліферативну активність у низьких мікромолярних концентраціях; їхні показники інгібування клітинного росту GI50 знаходяться в межах 1.7-11 мкМ. Отримані дані свідчать про те, що катіонні карбоксаміди трициклічних гетероароматичних систем є перспективними скафолдами для дизайну нових протипухлинних препаратів V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the National Academy of Sciences of Ukraine 2020-06-30 Article Article application/pdf https://bioorganica.com.ua/index.php/journal/article/view/6 10.15407/bioorganica2020.01.034 Ukrainica Bioorganica Acta; Vol. 15 No. 1 (2020): Ukrainica Bioorganica Acta; 34-41 Ukrainica Bioorganica Acta; Том 15 № 1 (2020): Ukrainica Bioorganica Acta; 34-41 1814-9766 1814-9758 10.15407/bioorganica2020.01 en https://bioorganica.com.ua/index.php/journal/article/view/6/8 Copyright (c) 2020 Valentina G. Kostina, Inna V. Alexeeva, Nadia A. Lysenko, Valentina V. Negrutska, Igor Y. Dubey https://creativecommons.org/licenses/by/4.0
spellingShingle акридон
феназин
тіоксантон
карбоксаміди
протипухлинні засоби
Kostina, Valentina G.
Alexeeva, Inna V.
Lysenko, Nadia A.
Negrutska, Valentina V.
Dubey, Igor Y.
Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title_alt Сationic carboxamide derivatives of tricyclic heteroaromatic compounds: synthesis and preliminary evaluation of antiproliferative activity
title_full Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title_fullStr Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title_full_unstemmed Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title_short Катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
title_sort катіонні карбоксамідні похідні трициклічних гетероароматичних сполук: синтез та попередня оцінка антипроліферативної активності
topic акридон
феназин
тіоксантон
карбоксаміди
протипухлинні засоби
topic_facet acridone
phenazine
thioxanthone
carboxamides
antitumor agents
акридон
феназин
тіоксантон
карбоксаміди
протипухлинні засоби
url https://bioorganica.com.ua/index.php/journal/article/view/6
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