Simulating of human physiological supersystems: integrative function of organs supporting cell life

A quantitative model of fluids’ dynamics (MFD) in the human body is created. Initially, MFD was realized as an autonomous C# software module (SM) functioning under given dynamic input characteristics. Later, SM was incorporated into our special software-modeling tool (SMT) capable of simulating the...

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Дата:2025
Автори: Grygoryan, R.D., Degoda, A.B., Lyudovyk, T.V., Yurchak, O.I.
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Опубліковано: PROBLEMS IN PROGRAMMING 2025
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Problems in programming
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author Grygoryan, R.D.
Degoda, A.B.
Lyudovyk, T.V.
Yurchak, O.I.
author_facet Grygoryan, R.D.
Degoda, A.B.
Lyudovyk, T.V.
Yurchak, O.I.
author_sort Grygoryan, R.D.
baseUrl_str https://pp.isofts.kiev.ua/index.php/ojs1/oai
collection OJS
datestamp_date 2025-04-16T13:57:48Z
description A quantitative model of fluids’ dynamics (MFD) in the human body is created. Initially, MFD was realized as an autonomous C# software module (SM) functioning under given dynamic input characteristics. Later, SM was incorporated into our special software-modeling tool (SMT) capable of simulating the main modes of the human physiological super-system (PSS) providing cells' life. MFD describes mechanisms regulating long-term blood, lymph, total cells’, and intercellular volumes. SMT simulates both intracellular and multicellular mechanisms providing cell energy balance despite casual dynamics of energy consumption rate. Multicellular mechanisms include complex systems controlling systemic and regional hemodynamics, interaction of the liver with the pancreas, blood filtration in kidneys, bladder function, and liquid expirations in lungs and skin in the background of a dynamic external environment. The latter is a gas atmosphere with altering pressure, illumination, temperature, humidity, and wind speed. Models have been tested using algorithms that design scenarios, including simulation of either short-time or long-time (hours or days) observations. Input data include different combinations of internal and external parameters including osmotic, and oncotic pressures. Output data include the main parameters characterizing organs and life support systems. Both student-medics and physiologists interested in providing theoretical research can be users of SM. Prombles in programming 2024; 4: 77-88
first_indexed 2025-07-17T09:47:43Z
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fulltext Комп’ютерне моделювання 77 УДК 517.958:57 +519.711.3 + 612.51.001 http://doi.org/10.15407/pp2024.04.077 R.D. Grygoryan, A.G. Degoda, T.V. Lyudovyk, O.I.Yurchak SIMULATING OF HUMAN PHYSIOLOGICAL SUPERSYSTEMS: INTEGRATIVE FUNCTION OF ORGANS SUPPORTING CELL LIFE A quantitative model of fluids’ dynamics (MFD) in the human body is created. Initially, MFD was realized as an autonomous C# software module (SM) functioning under given dynamic input characteristics. Later, SM was incorporated into our special software-modeling tool (SMT) capable of simulating the main modes of the human physiological super-system (PSS) providing cells' life. MFD describes mechanisms regulating long-term blood, lymph, total cells’, and intercellular volumes. SMT simulates both intracellular and multi- cellular mechanisms providing cell energy balance despite casual dynamics of energy consumption rate. Mul- ticellular mechanisms include complex systems controlling systemic and regional hemodynamics, interaction of the liver with the pancreas, blood filtration in kidneys, bladder function, and liquid expirations in lungs and skin in the background of a dynamic external environment. The latter is a gas atmosphere with altering pres- sure, illumination, temperature, humidity, and wind speed. Models have been tested using algorithms that design scenarios, including simulation of either short-time or long-time (hours or days) observations. Input data include different combinations of internal and external parameters including osmotic, and oncotic pres- sures. Output data include the main parameters characterizing organs and life support systems. Both student - medics and physiologists interested in providing theoretical research can be users of SM. Keywords: physical health, body fluids, physiological control, quantitative model, simulator Р.Д. Григорян, А.Г. Дегода, Т.В. Людовиk, О.І. Юрчак СИМУЛЯТОР ФІЗІОЛОГІЧНИХ НАДСИСТЕМ ЛЮДИНИ: ІНТЕГРАТИВНА ФУНКЦІЯ ОРГАНІВ ЖИТТЄЗАБЕЗПЕЧЕННЯ КЛІТИНИ Створено кількісну модель динаміки рідин (РРР) в організмі людини. Спочатку MFD був реалізований як автономний програмний модуль C# (SM), що функціонує при заданих динамічних вхідних характери- стиках. Пізніше SM було включено в наш спеціальний інструмент програмного моделювання (SMT), здатний моделювати основні режими фізіологічної суперсистеми людини (PSS), що забезпечує життєді- яльність клітин. MFD описує механізми довготривалої регуляції крові, лімфи та загального внутрішньо- клітинного та міжклітинного об’ємів. SMT моделює як внутрішньоклітинні, так і багатоклітинні механі- зми, що забезпечують енергетичний баланс клітини, незважаючи на випадкову динаміку швидкості спо- живання енергії. Багатоклітинні механізми включають складні системи контролю системної та регіона- льної гемодинаміки, взаємодії печінки з підшлунковою залозою, фільтрації крові в нирках, функції сечо- вого міхура, виділення рідини в легенях і шкірі на тлі динамічного зовнішнього середовища. Останнє являє собою газову атмосферу зі змінним тиском, освітленістю, температурою, вологістю та швидкістю вітру. Моделі були перевірені з використанням алгоритмів, які розробляють сценарії, включаючи симу- ляцію короткочасних або тривалих (години або дні) спостережень. Вхідні дані включають різні комбіна- ції внутрішніх і зовнішніх параметрів, включаючи осмотичний і онкотичний тиск. Вихідні дані містять основні параметри, що характеризують органи та системи життєзабезпечення. Користувачами СМ мо- жуть бути як студенти-медики, так і фізіологи, зацікавлені у проведенні теоретичних досліджень. Ключові слова: фізичне здоров’я, рідини організму, фізіологічний контроль, кількісна модель, тренажер © R.D. Grygoryan, A.G. Degoda, T.V. Lyudovyk, O.I. Yurchak, 2024 ISSN 1727-4907. Проблеми програмування. 2024. №4 Комп’ютерне моделювання 78 Introduction Physiologists and physicians use em- pirical technologies to measure a limited num- ber of life parameters that can quantitatively characterize the level of human physical health (HPH). Certainly, these parameters were sta- tistically verified for populations of healthy and seek people. However, physicians meet a problem: the parametric landscape of HPH dis- plays essential and often very complex altera- tions in time [1-3]. The origin of the observed instability of life parameters is still unknown. Moreover, neither physiologists nor medical scientists have ideas for conceptual overcom- ing the problem. In our opinion, the concept of physiological supersystems (PSS) [4-6], properly realized as a specialized computer simulator, could essentially assist in finding a way out of this methodological dead-end. The simulator must be based on special quantitative models of organs and anatomical-physiologi- cal systems that, according to PSS, were saved in vertebrates due to the essential role of these organs in evolution. Basic mathematical mod- els and software components have been al- ready developed [7-10]. The article proposes our vision of the final model, which integrates these compo- nents. Additionally, the article presents several test simulations demonstrating the potential of our software for physiologists and physicians. Mathematical model of PSS According to the concept of PSS, opti- mal cell metabolism is a fundamental condi- tion for the cellular long life and functionality in unstable external/internal environments. In- teractions between certain biochemical factors (also known as adaptation factors [1,11,12]) of every specialized cell and its nucleus adapt the expression of genes responsible for the effi- ciency of many molecular events including the rate of energy (ATP molecules) synthesis. However, the efficiency of autonomous intra- cellular regulators essentially falls in parallel with an increasing imbalance between biosyn- thesis and molecular destruction. Therefore, special adaptation factors, produced in these problematic cells and penetrated lymph or in- tercellular space, finally modify the activity of multiple multi-cellular mechanisms (MM). Some of MM enhances the basic intracellular regulators. In particular, a set of MM provides molecular rebuilding in the problematic cells with materials (oxygen, water, nutrients). An- other group of MM purifies the cytoplasm in these cells. So, the entire organism is chroni- cally under the influence of adaptation factors. This is the humoral mechanism capable of originating HPH's instability. As many chemi- cals influence target neurons of CNS, the latter also modifies the parametric landscape of HPH. It is the understanding that the landscape depends on the number of problematic cells. Every cell is a dynamic object adap- tively compensating for intracellular destruc- tions. In this context, one of the roles of MM is providing intracellular adaptive re-buildings with adequate inflows of primary materials (nutrients, oxygen, and water). The second role of MM provided by other organs is in ade- quately removing metabolic wastes. To pro- vide such a requirement, PSS must have a ra- ther complex construction. It was shown [5,6] that the digestive system, lungs, cardiovascular system (CVS), liver, pancreas, kidneys, ther- moregulatory system (TS), as well as special neural-hormonal mechanisms providing the fluids’ homeostasis are components of the PSS to be modeled. The main structural-functional blocks of PSS and their interrelations are illus- trated in Fig. 1. According to Fig.1, body fluids are par- tially located in four main reservoirs: cellular, intercellular, cardiovascular, and lymphatic. The cardiovascular system (CVS) is the pri- mary space for receiving the fluids absorbed in the gastrointestinal tract. A part of blood through capillaries penetrating the interstitial liquid space is the internal source for cells tak- ing oxygen and nutrients. The blood, remaining in capillaries, flows into venous capillaries and veins finally filling the central vein which is the reservoir for filling the right heart. So, in statics, the blood volume that leaves CVS and lym- phatic return to CVS are equal. However, mul- tiple factors can violate this equality. The interstitial reservoir plays a dual role. It is the second source of lymph and the space for the liquid exchanging with cells. The Комп’ютерне моделювання 79 cellular liquid contains both oxygen and nutri- ents. They are internal sources for the molecular synthesis of specific biological macromole- cules. A part of them (molecules of ATP) pro- vides all forms of intracellular biological work. Other macromolecules are ultra-structural units for constructing cellular organelles. Thanks to liver-pancreas interaction, ex- cess blood sugars can be transformed and accu- mulated into the liver as glycogen. Under low blood concentrations of glucose, this glycogen is back-transformed to glucose. The dynamics of boy fluids are associated with the activities of multiple specialized organs that are under the influences of nervous and hor- monal regulators. Models of these mechanisms have been already published by us [7-10]. Fluids can leave the body in three main ways – blood filtration in the kidneys, skin sweating (this is under mechanisms controlling the thermoregulation), and lung expiration. Therefore, the total body fluids and their parts in the four relatively isolated internal spaces can display complex dynamics depending on multiple external and internal factors. Our mod- els were properly advanced: the dynamics of in- ternal fluids' redistributions are described. Let us denote the body's total fluid vol- ume for every time moment as )(tVT . It can be presented as a sum of four components: )()()()()( tVtVtVtVtV LyInVСCVST +++= (1) In (1), CVSV is the total blood volume, VСV is the total liquid into cells, InV is the volume of the intercellular space, and LyV is the lym- phatic volume. )(tVCVS depends on the velocity of blood’s inflows and outflows. Let us the water inflow is )(tqInp , )(tqLE is the outflow (expiration) in lungs, )(tqSE is the evaporation through the skin, )(tqU is the urine outflow, )(tq IVС and )(tqVСС are the flows of liquid into and out of a virtual cell, )(tqIn is the inflow into the intercellular space, )(tqCf is the filtration in capillaries, and )(tqLy is the lymph flow. Then, the differential equa- tions (2)-(5) below describe relationships be- tween volumes and liquid flows: )()()( )()()()( tqtqtq tqtqtqtq dt dV LyInCf USELEInp CVS +−− −−−= (2) Fig. 1. Interaction of organs and anatomical-functional systems involved in PSS Комп’ютерне моделювання 80 )()()( tqtqtq dt dV LyVССCf VIn −−= (3) )()( tqtq dt dV LyCf VСС −= (4) )()( tqtq dt dV LyVСС VLy −= (5) The next system of equations (6)-(8) describes relationships between flows, pres- sures, and resistances in compartments: )(/))()(()( tRtPtPtq CInCCf −= (6) )(/))()(()( tRtPtPtq InCCInIn −= (7) )(/))()(()( tRtPtPtq LyСVLyLy −= (8) In (6)-(8), )(tPC is capillaries’ pressure, )(tRC is capillaries’ resistance, )(tP In is inter- stitial liquid’s pressure, )(tRInC is the re- sistance between interstitial and cell spaces, )(tPLy is the lymphatic pressure, СVP is the cen- tral vein pressure, and )(tRLy is the resistance of lymphatic collector. So, the equations’ system (1)-(8) is in- corporated into our algorithms developed for computer simulations of complex physiologi- cal mechanisms responsible for physical health. Calculations of pressures include the hydrostatic and osmotic (oncotic) components. Namely, two latter components play a key role in mechanisms that control the acid-basis and electrolytic homeostasis. Brief information about research software Simulation algorithms are similar to those published in [8,9]. Every simulation starts from the actualization of input data and simulation scenarios. These procedures are provided with assistant window forms. The simulation scenario covers both the simula- tion duration and combinations of dynamic tests. Our early software versions provided the user with simulation graph results only af- ter the entire scenario was processed. The cal- culation algorithm was modified to make sim- ulations more effective without using a more empowered computer. To construct graphs, the modified algorithm creates and saves a se- ries of data only for three neighbor time points (previous, current, next). This cardinally in- creased the real-time observation to be simu- lated. It can be both several seconds and sev- eral weeks. However, under long-lasting sim- ulations, the user was not informed about the simulation dynamics which sometimes can be wrong. Thus the algorithm is modified to il- lustrate the calculation dynamics for a repre- sentative group of biometric characteristics that can inform the modeler whether the sim- ulation goes in the planned course. Main simulation results The limited space of the article forced us to consider a limited number of test simula- tions. At the same time, we tried to illustrate both the simulation technology that may be in- teresting for programmers and several biologi- cal data that could attract physiologists and medics-researchers who are interested in wid- ening the research methods. This article does not provide the reader with simulation data reflecting the effects of concrete diseases. All simulations shown be- low have to demonstrate that our models and the software technology, despite being an in- terim product yet, are promising scientific tools. Perhaps, physiologists and medics-re- searchers as potential users of our software will know that after a proper modification, the proposed software can be used for mining ad- ditional information concerning functions of every organ involved in PSS. Figures 2 and 3 illustrate special graph forms, providing tuning procedures for appro- priate model components. Комп’ютерне моделювання 81 Fig. 2. A fragment of the user interface illustrating the window form for actualizing values of intercellular, cellular, and lymphatic compartments of the model before starting a simulation Fig. 3. A fragment of the user interface illustrating the window form for actualizing values of the kidney and bladder models before starting the simulation Комп’ютерне моделювання 82 Figures 4-12 illustrate several results of a computer simulation. The simulation scenario includes the following: 1) the human body position is horizontal; 2) neural and hormonal regulators controlling the function of CVS are switched on; 3) brain neurons reacting to alterations of liquor’s osmotic pressure are switched off; 4) concentrations of atmosphere gases are in the norm; 5) within 24 hours period of observation the light intensity alters with the 12-hour day/night period starting from 6 hours of the morning; 6) air temperature, humidity, wind speed have the fixed dynamics; 7) serotonin and melatonin hormones display normal circadian dynamics. Fig. 4. Seven biological characteristics that can be specially displayed during calculations (the user arbitrarily sets intervals for every next time point) Fig. 5. The dynamics of body fluids (total and in four compartments). The simulation scenario provides a 24-hour experiment under natural dynamics of environmental temperature and lightness without activating the brain receptors of osmotic pressure Комп’ютерне моделювання 83 Fig. 6. Simulated dynamics of air parameters Fig. 7. Simulated dynamics of body temperatures according to the model of thermoregulation Комп’ютерне моделювання 84 Fig. 8. Simulated dynamics of additional characteristics according to the model of thermoregulation Fig. 9. Simulated dynamics of several cardiovascular characteristics Комп’ютерне моделювання 85 Fig. 10. Simulated dynamics of additional cardiovascular characteristics Fig. 11. Simulated dynamics of the kidney model demonstrating the difference between the production of the primary urine and its partial reabsorption Комп’ютерне моделювання 86 Fig. 12. Simulated dynamics of the kidney-bladder model demonstrating periodical fillings and emptying of the bladder per day (changes in hormonal activity taken into account) Discussion Our models are based on fundamental physiological knowledge including quantita- tive data like those presented in [2,3,11,12,16]. It was also critically analyzed the experience of colleagues [13-17]. Certainly, not every model constant is strongly verified. At the same time, such parameters were varied in some ranges to estimate their potential role in system-scale incorrectness. Results illustrated in Fig.4 – Fig.12 are only part of the infor- mation provided by our current software-mod- elling tool. It can simulate more thinkable sce- narios and yield essentially more physiological output data. However, our current purpose was mainly to demonstrate the usability of the sim- ulator. We plan to publish physiological as- pects in biomedical journals. Before doing it, we aimed to thoroughly test every component model and the whole simulator using much more empirical data. Besides, the final user in- terface will be advanced to become maximally friendly for physiologists and physicians. We think that the fact that such a complex research tool has already been developed is an essential step forward. Conclusion For the first time, a special software- modeling tool (simulator) capable of essen- tially widening and deepening research op- portunities of modern human physiologists and medics-researchers was developed. The main models, software units and the entire simulator had been mainly tested for the most well-known test scenarios. In addition to a big list of standard scenarios, the simulator provides the user with easy algorithms for constructing and simulating new scenarios. The simulator is the lonely research tool for obtaining novel data concerning the interac- tion of human organs that optimize cells’ me- tabolism. 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Lyudovyk Tetyana, Senior scientist, PhD. https://orcid.org/0000-0003-0209-2001. Yurchak Oksana, Leading software engineer. https://orcid.org/0000-0003-3941-1555. Place of work: Institute of software systems of Ukraine National Academy of Sciences 03187, Кyїv, Acad. Glushkov avenue, 40, Phone.: 066 683 0853. Е-mail:rgrygoryan@gmail.com, anna@silverlinecrm.com, tetyana.lyudovyk@gmail.com, daravatan@gmail.com,
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spelling pp_isofts_kiev_ua-article-6762025-04-16T13:57:48Z Simulating of human physiological supersystems: integrative function of organs supporting cell life Симулятор фізіологічних надсистем людини: інтегрована функція органів життєзабезпечення клітини Grygoryan, R.D. Degoda, A.B. Lyudovyk, T.V. Yurchak, O.I. physical health; body fluids; physiological control; quantitative model; simulator UDC 517.958:57 +519.711.3 + 612.51.001 фізичне здоров’я; рідини організму; фізіологічний контроль; кількісна модель; тренажер УДК 517.958:57 +519.711.3 + 612.51.001 A quantitative model of fluids’ dynamics (MFD) in the human body is created. Initially, MFD was realized as an autonomous C# software module (SM) functioning under given dynamic input characteristics. Later, SM was incorporated into our special software-modeling tool (SMT) capable of simulating the main modes of the human physiological super-system (PSS) providing cells' life. MFD describes mechanisms regulating long-term blood, lymph, total cells’, and intercellular volumes. SMT simulates both intracellular and multicellular mechanisms providing cell energy balance despite casual dynamics of energy consumption rate. Multicellular mechanisms include complex systems controlling systemic and regional hemodynamics, interaction of the liver with the pancreas, blood filtration in kidneys, bladder function, and liquid expirations in lungs and skin in the background of a dynamic external environment. The latter is a gas atmosphere with altering pressure, illumination, temperature, humidity, and wind speed. Models have been tested using algorithms that design scenarios, including simulation of either short-time or long-time (hours or days) observations. Input data include different combinations of internal and external parameters including osmotic, and oncotic pressures. Output data include the main parameters characterizing organs and life support systems. Both student-medics and physiologists interested in providing theoretical research can be users of SM. Prombles in programming 2024; 4: 77-88 Створено кількісну модель динаміки рідин (РРР) в організмі людини. Спочатку MFD був реалізований як автономний програмний модуль C# (SM), що функціонує при заданих динамічних вхідних характеристиках. Пізніше SM було включено в наш спеціальний інструмент програмного моделювання (SMT), здатний моделювати основні режими фізіологічної суперсистеми людини (PSS), що забезпечує життєдіяльність клітин. MFD описує механізми довготривалої регуляції крові, лімфи та загального внутрішньоклітинного та міжклітинного об’ємів. SMT моделює як внутрішньоклітинні, так і багатоклітинні механізми, що забезпечують енергетичний баланс клітини, незважаючи на випадкову динаміку швидкості споживання енергії. Багатоклітинні механізми включають складні системи контролю системної та регіональної гемодинаміки, взаємодії печінки з підшлунковою залозою, фільтрації крові в нирках, функції сечового міхура, виділення рідини в легенях і шкірі на тлі динамічного зовнішнього середовища. Останнє являє собою газову атмосферу зі змінним тиском, освітленістю, температурою, вологістю та швидкістю вітру. Моделі були перевірені з використанням алгоритмів, які розробляють сценарії, включаючи симуляцію короткочасних або тривалих (години або дні) спостережень. Вхідні дані включають різні комбінації внутрішніх і зовнішніх параметрів, включаючи осмотичний і онкотичний тиск. Вихідні дані містять основні параметри, що характеризують органи та системи життєзабезпечення. Користувачами СМ можуть бути як студенти-медики, так і фізіологи, зацікавлені у проведенні теоретичних досліджень.Prombles in programming 2024; 4: 77-88 PROBLEMS IN PROGRAMMING ПРОБЛЕМЫ ПРОГРАММИРОВАНИЯ ПРОБЛЕМИ ПРОГРАМУВАННЯ 2025-04-16 Article Article application/pdf https://pp.isofts.kiev.ua/index.php/ojs1/article/view/676 10.15407/pp2024.04.077 PROBLEMS IN PROGRAMMING; No 4 (2024); 77-88 ПРОБЛЕМЫ ПРОГРАММИРОВАНИЯ; No 4 (2024); 77-88 ПРОБЛЕМИ ПРОГРАМУВАННЯ; No 4 (2024); 77-88 1727-4907 10.15407/pp2024.04 en https://pp.isofts.kiev.ua/index.php/ojs1/article/view/676/728 Copyright (c) 2025 PROBLEMS IN PROGRAMMING
spellingShingle physical health
body fluids
physiological control
quantitative model
simulator
UDC 517.958:57 +519.711.3 + 612.51.001
Grygoryan, R.D.
Degoda, A.B.
Lyudovyk, T.V.
Yurchak, O.I.
Simulating of human physiological supersystems: integrative function of organs supporting cell life
title Simulating of human physiological supersystems: integrative function of organs supporting cell life
title_alt Симулятор фізіологічних надсистем людини: інтегрована функція органів життєзабезпечення клітини
title_full Simulating of human physiological supersystems: integrative function of organs supporting cell life
title_fullStr Simulating of human physiological supersystems: integrative function of organs supporting cell life
title_full_unstemmed Simulating of human physiological supersystems: integrative function of organs supporting cell life
title_short Simulating of human physiological supersystems: integrative function of organs supporting cell life
title_sort simulating of human physiological supersystems: integrative function of organs supporting cell life
topic physical health
body fluids
physiological control
quantitative model
simulator
UDC 517.958:57 +519.711.3 + 612.51.001
topic_facet physical health
body fluids
physiological control
quantitative model
simulator
UDC 517.958:57 +519.711.3 + 612.51.001
фізичне здоров’я
рідини організму
фізіологічний контроль
кількісна модель
тренажер
УДК 517.958:57 +519.711.3 + 612.51.001
url https://pp.isofts.kiev.ua/index.php/ojs1/article/view/676
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